(49 nodes) ECM-receptor interaction, and Collagen degradation network (Daphnia magna)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_001421	Retrotrans_gag domain-containing protein. (324 aa)
	APZ42_015468	Putative Integrin alpha-ps; Belongs to the integrin alpha chain family. (650 aa)
	APZ42_026686	Structural maintenance of chromosomes 1A-like protein. (129 aa)
	APZ42_020995	Jmjc domain-containing histone demethylation protein. (535 aa)
	APZ42_017991	Integrin alpha-PS3; Belongs to the integrin alpha chain family. (1163 aa)
	APZ42_027675	Uncharacterized protein. (1392 aa)
	APZ42_019965	Uncharacterized protein. (189 aa)
	APZ42_011512	Obstructor-J. (725 aa)
	APZ42_029335	Integrin alpha-PS2; Belongs to the integrin alpha chain family. (1211 aa)
	APZ42_029557	Putative Collagen alpha-1(XXV) chain. (1782 aa)
	APZ42_014363	Integrin beta; Belongs to the integrin beta chain family. (614 aa)
	APZ42_015074	Microtubule-actin cross-linking factor 1. (5007 aa)
	APZ42_015257	Protein kinase C-binding protein NELL2. (1072 aa)
	APZ42_015460	Integrin alpha-PS4; Belongs to the integrin alpha chain family. (969 aa)
	APZ42_014631	Uncharacterized protein. (960 aa)
	APZ42_013605	Matrix metalloproteinase 1. (705 aa)
	APZ42_013526	Uncharacterized protein. (353 aa)
	APZ42_011273	Laminin subunit gamma-3. (1735 aa)
	APZ42_011049	Putative Down Syndrome cell adhesion molecule protein 1. (651 aa)
	APZ42_011033	Pregnancy-specific beta-1-glycoprotein 8. (3438 aa)
	APZ42_000668	Ricin B-type lectin domain-containing protein. (384 aa)
	APZ42_034076	Uncharacterized protein. (436 aa)
	APZ42_034074	Putative Collagen alpha-1(XIII) chain. (569 aa)
	APZ42_034132	Matrix metalloproteinase-24. (652 aa)
	APZ42_034018	Uncharacterized protein. (943 aa)
	APZ42_031663	Putative Collagen alpha-1(XXVII) chain. (1607 aa)
	APZ42_031292	Uncharacterized protein. (1275 aa)
	APZ42_029396	Putative Mucin 91C. (1566 aa)
	APZ42_029556	Viking. (1766 aa)
	APZ42_028279	Laminin subunit beta-1. (1611 aa)
	APZ42_028343	Collagen alpha-2 chain. (1020 aa)
	APZ42_027107	Uncharacterized protein. (514 aa)
	APZ42_026826	Putative Fibulin-1/sw. (146 aa)
	APZ42_026234	Integrin alpha-PS1; Belongs to the integrin alpha chain family. (999 aa)
	APZ42_024069	Scavenger receptor class A member 5-like protein. (438 aa)
	APZ42_023679	Oxidative stress-induced growth inhibitor 2. (521 aa)
	APZ42_023526	Laminin subunit gamma-3. (3391 aa)
	APZ42_022888	Uncharacterized protein. (530 aa)
	APZ42_021340	Matrix metalloproteinase variant. (436 aa)
	APZ42_020900	Uncharacterized protein. (478 aa)
	APZ42_020544	Putative Latent-transforming growth factor beta-binding protein 3. (9549 aa)
	APZ42_019400	Uncharacterized protein. (2993 aa)
	APZ42_019032	Uncharacterized protein. (1094 aa)
	APZ42_018949	Integrin beta; Belongs to the integrin beta chain family. (786 aa)
	APZ42_018962	Putative Matrix metalloproteinase variant. (229 aa)
	APZ42_018315	Transmembrane protein 62. (656 aa)
	APZ42_018090	Multiplexin. (1307 aa)
	APZ42_017724	Putative cTAGE family member 5. (1716 aa)
	APZ42_016793	Laminin subunit beta-1. (3675 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000668	APZ42_013605	A0A164JGV0	A0A162QMH1	Ricin B-type lectin domain-containing protein.	Matrix metalloproteinase 1.	0.488
APZ42_000668	APZ42_014363	A0A164JGV0	A0A162EJD3	Ricin B-type lectin domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.541
APZ42_000668	APZ42_015460	A0A164JGV0	A0A162PIG7	Ricin B-type lectin domain-containing protein.	Integrin alpha-PS4; Belongs to the integrin alpha chain family.	0.488
APZ42_000668	APZ42_015468	A0A164JGV0	A0A0N8CPN8	Ricin B-type lectin domain-containing protein.	Putative Integrin alpha-ps; Belongs to the integrin alpha chain family.	0.488
APZ42_000668	APZ42_017991	A0A164JGV0	A0A0P6BPR5	Ricin B-type lectin domain-containing protein.	Integrin alpha-PS3; Belongs to the integrin alpha chain family.	0.488
APZ42_000668	APZ42_018949	A0A164JGV0	A0A164YYE1	Ricin B-type lectin domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.541
APZ42_000668	APZ42_018962	A0A164JGV0	A0A164YYS7	Ricin B-type lectin domain-containing protein.	Putative Matrix metalloproteinase variant.	0.488
APZ42_000668	APZ42_020995	A0A164JGV0	A0A0P5E1N6	Ricin B-type lectin domain-containing protein.	Jmjc domain-containing histone demethylation protein.	0.488
APZ42_000668	APZ42_021340	A0A164JGV0	A0A164WRS0	Ricin B-type lectin domain-containing protein.	Matrix metalloproteinase variant.	0.488
APZ42_000668	APZ42_026234	A0A164JGV0	A0A164SB27	Ricin B-type lectin domain-containing protein.	Integrin alpha-PS1; Belongs to the integrin alpha chain family.	0.488
APZ42_000668	APZ42_029335	A0A164JGV0	A0A162D4L2	Ricin B-type lectin domain-containing protein.	Integrin alpha-PS2; Belongs to the integrin alpha chain family.	0.488
APZ42_000668	APZ42_031292	A0A164JGV0	A0A164MYC5	Ricin B-type lectin domain-containing protein.	Uncharacterized protein.	0.617
APZ42_000668	APZ42_034132	A0A164JGV0	A0A164KHU5	Ricin B-type lectin domain-containing protein.	Matrix metalloproteinase-24.	0.488
APZ42_001421	APZ42_011033	A0A0N7ZKN4	A0A162T4R9	Retrotrans_gag domain-containing protein.	Pregnancy-specific beta-1-glycoprotein 8.	0.553
APZ42_001421	APZ42_011049	A0A0N7ZKN4	A0A162T4Q6	Retrotrans_gag domain-containing protein.	Putative Down Syndrome cell adhesion molecule protein 1.	0.553
APZ42_001421	APZ42_011273	A0A0N7ZKN4	A0A162SJ87	Retrotrans_gag domain-containing protein.	Laminin subunit gamma-3.	0.591
APZ42_001421	APZ42_013605	A0A0N7ZKN4	A0A162QMH1	Retrotrans_gag domain-containing protein.	Matrix metalloproteinase 1.	0.517
APZ42_001421	APZ42_014363	A0A0N7ZKN4	A0A162EJD3	Retrotrans_gag domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.753
APZ42_001421	APZ42_015460	A0A0N7ZKN4	A0A162PIG7	Retrotrans_gag domain-containing protein.	Integrin alpha-PS4; Belongs to the integrin alpha chain family.	0.685
APZ42_001421	APZ42_015468	A0A0N7ZKN4	A0A0N8CPN8	Retrotrans_gag domain-containing protein.	Putative Integrin alpha-ps; Belongs to the integrin alpha chain family.	0.685