STRINGSTRING
APZ42_014821 APZ42_014821 APZ42_021806 APZ42_021806 APZ42_012190 APZ42_012190 APZ42_017655 APZ42_017655 APZ42_017057 APZ42_017057 APZ42_034019 APZ42_034019 EOG090X0PCK EOG090X0PCK APZ42_017029 APZ42_017029 EOG090X0NWO EOG090X0NWO APZ42_022245 APZ42_022245 APZ42_012093 APZ42_012093 APZ42_017061 APZ42_017061 APZ42_011517 APZ42_011517 APZ42_011543 APZ42_011543 APZ42_002383 APZ42_002383 APZ42_015050 APZ42_015050 APZ42_013593 APZ42_013593 APZ42_013642 APZ42_013642 APZ42_012562 APZ42_012562 APZ42_012032 APZ42_012032 APZ42_010900 APZ42_010900 APZ42_005758 APZ42_005758 APZ42_005470 APZ42_005470 APZ42_034474 APZ42_034474 EOG090X0J86 EOG090X0J86 APZ42_029355 APZ42_029355 APZ42_029427 APZ42_029427 APZ42_027674 APZ42_027674 APZ42_021155 APZ42_021155 APZ42_018498 APZ42_018498 APZ42_018043 APZ42_018043 APZ42_017703 APZ42_017703 APZ42_016661 APZ42_016661
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APZ42_014821Protein IWS1. (586 aa)
APZ42_021806RNA polymerase II-associated factor 1. (510 aa)
APZ42_012190Putative Another transcription unit protein. (588 aa)
APZ42_017655DNA-directed RNA polymerases I, II, and III subunit RPABC2. (129 aa)
APZ42_017057DUF2236 domain-containing protein. (429 aa)
APZ42_034019Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2. (450 aa)
EOG090X0PCKDNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
APZ42_017029DNA excision repair protein ERCC-8. (403 aa)
EOG090X0NWOTranscription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
APZ42_022245Transcription elongation factor A N-terminal and central domain-containing protein 2. (210 aa)
APZ42_012093DNA-directed RNA polymerase II subunit RPB3. (274 aa)
APZ42_017061DNA-directed RNA polymerase II subunit RPB7. (172 aa)
APZ42_011517Parafibromin. (556 aa)
APZ42_011543FACT complex subunit SPT16. (1084 aa)
APZ42_002383Putative DNA-directed RNA polymerase subunit beta. (107 aa)
APZ42_015050Cyclin-dependent kinase 2-interacting protein. (201 aa)
APZ42_013593FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (568 aa)
APZ42_013642Uncharacterized protein. (538 aa)
APZ42_012562Uncharacterized protein. (287 aa)
APZ42_012032Putative Transcription elongation factor SPT6. (2295 aa)
APZ42_010900RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (820 aa)
APZ42_005758DNA-directed RNA polymerase subunit beta. (86 aa)
APZ42_005470Putative DNA-directed RNA polymerase subunit beta. (120 aa)
APZ42_034474RNA polymerase-associated protein CTR9. (1181 aa)
EOG090X0J86DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (127 aa)
APZ42_029355DNA-directed RNA polymerase. (379 aa)
APZ42_029427Transcription elongation factor SPT5. (1048 aa)
APZ42_027674Transcription elongation factor S-II. (260 aa)
APZ42_021155Uncharacterized protein. (361 aa)
APZ42_018498RNA polymerase-associated protein Rtf1. (203 aa)
APZ42_018043Putative RNA polymerase-associated protein Rtf1. (520 aa)
APZ42_017703DNA-directed RNA polymerase; Belongs to the RNA polymerase beta chain family. (775 aa)
APZ42_016661DNA excision repair ERCC-6-like protein. (1184 aa)
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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