(12 nodes) Mixed, incl. Nuclear cyclin-dependent protein kinase holoenzyme complex, and ELL/occludin family network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EOG090X09KD	Cyclin K-like protein; Belongs to the cyclin family. (407 aa)
	APZ42_011724	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily. (384 aa)
	APZ42_002941	RNA polymerase II elongation factor ELL. (83 aa)
	APZ42_013507	Uncharacterized protein. (434 aa)
	APZ42_030367	DNA-directed RNA polymerase. (436 aa)
	APZ42_027786	Putative Cyclin-dependent protein kinase protein. (1208 aa)
	APZ42_023368	RNA polymerase II elongation factor ELL-like protein. (501 aa)
	APZ42_020719	AHD domain-containing protein. (838 aa)
	APZ42_019440	Transcription elongation factor B Polypeptide 3. (514 aa)
	APZ42_017810	Putative Cyclin-L1; Belongs to the cyclin family. (971 aa)
	APZ42_017597	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1454 aa)
	APZ42_016228	AF4/FMR2 family member 4. (888 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002941	APZ42_011724	A0A162CXQ4	A0A0P5ZF74	RNA polymerase II elongation factor ELL.	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	0.864
APZ42_002941	APZ42_013507	A0A162CXQ4	A0A162QT94	RNA polymerase II elongation factor ELL.	Uncharacterized protein.	0.862
APZ42_002941	APZ42_016228	A0A162CXQ4	A0A165AJ39	RNA polymerase II elongation factor ELL.	AF4/FMR2 family member 4.	0.862
APZ42_002941	APZ42_017597	A0A162CXQ4	A0A164ZZ64	RNA polymerase II elongation factor ELL.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.653
APZ42_002941	APZ42_017810	A0A162CXQ4	A0A164ZJ54	RNA polymerase II elongation factor ELL.	Putative Cyclin-L1; Belongs to the cyclin family.	0.833
APZ42_002941	APZ42_019440	A0A162CXQ4	A0A164Y5X4	RNA polymerase II elongation factor ELL.	Transcription elongation factor B Polypeptide 3.	0.785
APZ42_002941	APZ42_020719	A0A162CXQ4	A0A164XBK6	RNA polymerase II elongation factor ELL.	AHD domain-containing protein.	0.861
APZ42_002941	APZ42_027786	A0A162CXQ4	A0A164R3K2	RNA polymerase II elongation factor ELL.	Putative Cyclin-dependent protein kinase protein.	0.621
APZ42_002941	APZ42_030367	A0A162CXQ4	A0A164NU33	RNA polymerase II elongation factor ELL.	DNA-directed RNA polymerase.	0.610
APZ42_002941	EOG090X09KD	A0A162CXQ4	A0A0P5L3T8	RNA polymerase II elongation factor ELL.	Cyclin K-like protein; Belongs to the cyclin family.	0.723
APZ42_011724	APZ42_002941	A0A0P5ZF74	A0A162CXQ4	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	RNA polymerase II elongation factor ELL.	0.864
APZ42_011724	APZ42_013507	A0A0P5ZF74	A0A162QT94	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.965
APZ42_011724	APZ42_016228	A0A0P5ZF74	A0A165AJ39	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	AF4/FMR2 family member 4.	0.965
APZ42_011724	APZ42_017597	A0A0P5ZF74	A0A164ZZ64	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.925
APZ42_011724	APZ42_017810	A0A0P5ZF74	A0A164ZJ54	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	Putative Cyclin-L1; Belongs to the cyclin family.	0.999
APZ42_011724	APZ42_019440	A0A0P5ZF74	A0A164Y5X4	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	Transcription elongation factor B Polypeptide 3.	0.733
APZ42_011724	APZ42_020719	A0A0P5ZF74	A0A164XBK6	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	AHD domain-containing protein.	0.945
APZ42_011724	APZ42_023368	A0A0P5ZF74	A0A164V0I1	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	RNA polymerase II elongation factor ELL-like protein.	0.864
APZ42_011724	APZ42_027786	A0A0P5ZF74	A0A164R3K2	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	Putative Cyclin-dependent protein kinase protein.	0.782
APZ42_011724	APZ42_030367	A0A0P5ZF74	A0A164NU33	Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase.	0.879