(10 nodes) Myb complex, and E2F Family network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_029459	Transcription factor E2F4. (283 aa)
	APZ42_031506	Lin-54. (893 aa)
	APZ42_028172	Putative Transcription factor E2F4. (452 aa)
	APZ42_022198	Protein lin-37. (250 aa)
	APZ42_014663	Retinoblastoma family protein. (1077 aa)
	APZ42_011612	Putative Myb-related protein B. (823 aa)
	APZ42_010980	Protein lin-52. (123 aa)
	APZ42_025541	Protein lin-9. (720 aa)
	APZ42_022996	Uncharacterized protein. (687 aa)
	EOG090X0B66	Transcription factor. (447 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_010980	APZ42_011612	A0A162TD12	A0A162SUI1	Protein lin-52.	Putative Myb-related protein B.	0.991
APZ42_010980	APZ42_014663	A0A162TD12	A0A162PPF2	Protein lin-52.	Retinoblastoma family protein.	0.991
APZ42_010980	APZ42_022198	A0A162TD12	A0A0P5UMR8	Protein lin-52.	Protein lin-37.	0.990
APZ42_010980	APZ42_022996	A0A162TD12	A0A164VC08	Protein lin-52.	Uncharacterized protein.	0.966
APZ42_010980	APZ42_025541	A0A162TD12	A0A164SYA7	Protein lin-52.	Protein lin-9.	0.999
APZ42_010980	APZ42_028172	A0A162TD12	A0A0P5U694	Protein lin-52.	Putative Transcription factor E2F4.	0.856
APZ42_010980	APZ42_029459	A0A162TD12	A0A0N8CXB6	Protein lin-52.	Transcription factor E2F4.	0.874
APZ42_010980	APZ42_031506	A0A162TD12	A0A0P5T8R7	Protein lin-52.	Lin-54.	0.998
APZ42_010980	EOG090X0B66	A0A162TD12	A0A164X5T4	Protein lin-52.	Transcription factor.	0.895
APZ42_011612	APZ42_010980	A0A162SUI1	A0A162TD12	Putative Myb-related protein B.	Protein lin-52.	0.991
APZ42_011612	APZ42_014663	A0A162SUI1	A0A162PPF2	Putative Myb-related protein B.	Retinoblastoma family protein.	0.728
APZ42_011612	APZ42_022198	A0A162SUI1	A0A0P5UMR8	Putative Myb-related protein B.	Protein lin-37.	0.990
APZ42_011612	APZ42_025541	A0A162SUI1	A0A164SYA7	Putative Myb-related protein B.	Protein lin-9.	0.979
APZ42_011612	APZ42_028172	A0A162SUI1	A0A0P5U694	Putative Myb-related protein B.	Putative Transcription factor E2F4.	0.550
APZ42_011612	APZ42_029459	A0A162SUI1	A0A0N8CXB6	Putative Myb-related protein B.	Transcription factor E2F4.	0.658
APZ42_011612	APZ42_031506	A0A162SUI1	A0A0P5T8R7	Putative Myb-related protein B.	Lin-54.	0.977
APZ42_014663	APZ42_010980	A0A162PPF2	A0A162TD12	Retinoblastoma family protein.	Protein lin-52.	0.991
APZ42_014663	APZ42_011612	A0A162PPF2	A0A162SUI1	Retinoblastoma family protein.	Putative Myb-related protein B.	0.728
APZ42_014663	APZ42_022198	A0A162PPF2	A0A0P5UMR8	Retinoblastoma family protein.	Protein lin-37.	0.966
APZ42_014663	APZ42_022996	A0A162PPF2	A0A164VC08	Retinoblastoma family protein.	Uncharacterized protein.	0.694