(13 nodes) Mixed, incl. DNA polymerase A, and Three-prime repair exonuclease 1/2 network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_021142	Putative Ribonuclease H1. (356 aa)
	APZ42_026784	Three prime repair exonuclease. (243 aa)
	APZ42_021851	Putative Flap endonuclease GEN. (654 aa)
	APZ42_002118	POLAc domain-containing protein. (83 aa)
	APZ42_010993	DNA polymerase theta. (1637 aa)
	APZ42_010732	DNA polymerase theta. (60 aa)
	APZ42_004581	RNase H domain-containing protein. (175 aa)
	APZ42_001907	ZnF_CHCC domain-containing protein. (229 aa)
	APZ42_001217	Exonuclease domain-containing protein. (151 aa)
	APZ42_028692	Ribonuclease H1-like protein. (178 aa)
	APZ42_028100	Ribonuclease H1. (290 aa)
	APZ42_026501	Fas apoptotic inhibitory molecule 1. (1143 aa)
	APZ42_024123	Uncharacterized protein. (99 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001217	APZ42_002118	A0A164J406	A0A162CZA9	Exonuclease domain-containing protein.	POLAc domain-containing protein.	0.547
APZ42_001217	APZ42_004581	A0A164J406	A0A164GZ00	Exonuclease domain-containing protein.	RNase H domain-containing protein.	0.477
APZ42_001217	APZ42_010732	A0A164J406	A0A164D8X1	Exonuclease domain-containing protein.	DNA polymerase theta.	0.547
APZ42_001217	APZ42_010993	A0A164J406	A0A162T435	Exonuclease domain-containing protein.	DNA polymerase theta.	0.547
APZ42_001217	APZ42_021142	A0A164J406	A0A0N8CKG9	Exonuclease domain-containing protein.	Putative Ribonuclease H1.	0.477
APZ42_001217	APZ42_024123	A0A164J406	A0A164UGC5	Exonuclease domain-containing protein.	Uncharacterized protein.	0.410
APZ42_001217	APZ42_026501	A0A164J406	A0A164S9I6	Exonuclease domain-containing protein.	Fas apoptotic inhibitory molecule 1.	0.547
APZ42_001217	APZ42_028100	A0A164J406	A0A164QTG7	Exonuclease domain-containing protein.	Ribonuclease H1.	0.477
APZ42_001217	APZ42_028692	A0A164J406	A0A164QAD8	Exonuclease domain-containing protein.	Ribonuclease H1-like protein.	0.477
APZ42_001907	APZ42_002118	A0A164INB6	A0A162CZA9	ZnF_CHCC domain-containing protein.	POLAc domain-containing protein.	0.732
APZ42_001907	APZ42_010732	A0A164INB6	A0A164D8X1	ZnF_CHCC domain-containing protein.	DNA polymerase theta.	0.732
APZ42_001907	APZ42_010993	A0A164INB6	A0A162T435	ZnF_CHCC domain-containing protein.	DNA polymerase theta.	0.732
APZ42_001907	APZ42_021851	A0A164INB6	A0A0P5ZVK6	ZnF_CHCC domain-containing protein.	Putative Flap endonuclease GEN.	0.753
APZ42_001907	APZ42_026501	A0A164INB6	A0A164S9I6	ZnF_CHCC domain-containing protein.	Fas apoptotic inhibitory molecule 1.	0.732
APZ42_002118	APZ42_001217	A0A162CZA9	A0A164J406	POLAc domain-containing protein.	Exonuclease domain-containing protein.	0.547
APZ42_002118	APZ42_001907	A0A162CZA9	A0A164INB6	POLAc domain-containing protein.	ZnF_CHCC domain-containing protein.	0.732
APZ42_002118	APZ42_004581	A0A162CZA9	A0A164GZ00	POLAc domain-containing protein.	RNase H domain-containing protein.	0.560
APZ42_002118	APZ42_021142	A0A162CZA9	A0A0N8CKG9	POLAc domain-containing protein.	Putative Ribonuclease H1.	0.560
APZ42_002118	APZ42_021851	A0A162CZA9	A0A0P5ZVK6	POLAc domain-containing protein.	Putative Flap endonuclease GEN.	0.589
APZ42_002118	APZ42_024123	A0A162CZA9	A0A164UGC5	POLAc domain-containing protein.	Uncharacterized protein.	0.547