(14 nodes) LDLR class B repeat, and EMI domain network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_034126	Very Low-density lipoprotein receptor. (887 aa)
	APZ42_031293	Alpha-2-macroglobulin receptor-associated protein. (357 aa)
	APZ42_031534	PTB domain-containing adapter protein ced-6. (424 aa)
	APZ42_003083	BMP and activin membrane-bound inhibitor. (204 aa)
	APZ42_015989	E3 ubiquitin-protein ligase MYLIP. (469 aa)
	APZ42_013131	Uncharacterized protein. (2599 aa)
	APZ42_010850	Putative Vitellogenin receptor. (1351 aa)
	APZ42_001817	Low-density lipoprotein receptor-related protein 2. (214 aa)
	APZ42_034371	Vitellogenin receptor. (1763 aa)
	APZ42_028941	Low-density lipoprotein receptor-related protein 2. (4788 aa)
	APZ42_028675	Eater. (1100 aa)
	APZ42_024115	Low-density lipoprotein receptor-related protein 2. (1403 aa)
	APZ42_024105	Low-density lipoprotein receptor-related protein 2. (4941 aa)
	APZ42_018078	Low-density lipoprotein receptor-related protein 2. (362 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001817	APZ42_003083	A0A164IQA7	A0A162CXH5	Low-density lipoprotein receptor-related protein 2.	BMP and activin membrane-bound inhibitor.	0.614
APZ42_001817	APZ42_010850	A0A164IQA7	A0A162T8L4	Low-density lipoprotein receptor-related protein 2.	Putative Vitellogenin receptor.	0.624
APZ42_001817	APZ42_013131	A0A164IQA7	A0A162R1P6	Low-density lipoprotein receptor-related protein 2.	Uncharacterized protein.	0.600
APZ42_001817	APZ42_015989	A0A164IQA7	A0A162NJ05	Low-density lipoprotein receptor-related protein 2.	E3 ubiquitin-protein ligase MYLIP.	0.673
APZ42_001817	APZ42_018078	A0A164IQA7	A0A164ZD60	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 2.	0.925
APZ42_001817	APZ42_024105	A0A164IQA7	A0A164UH83	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 2.	0.903
APZ42_001817	APZ42_024115	A0A164IQA7	A0A164UH25	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 2.	0.569
APZ42_001817	APZ42_028675	A0A164IQA7	A0A164QBB7	Low-density lipoprotein receptor-related protein 2.	Eater.	0.557
APZ42_001817	APZ42_031293	A0A164IQA7	A0A0P5F3Z0	Low-density lipoprotein receptor-related protein 2.	Alpha-2-macroglobulin receptor-associated protein.	0.776
APZ42_001817	APZ42_031534	A0A164IQA7	A0A0P5P4T6	Low-density lipoprotein receptor-related protein 2.	PTB domain-containing adapter protein ced-6.	0.621
APZ42_001817	APZ42_034371	A0A164IQA7	A0A164K5K2	Low-density lipoprotein receptor-related protein 2.	Vitellogenin receptor.	0.659
APZ42_003083	APZ42_001817	A0A162CXH5	A0A164IQA7	BMP and activin membrane-bound inhibitor.	Low-density lipoprotein receptor-related protein 2.	0.614
APZ42_003083	APZ42_010850	A0A162CXH5	A0A162T8L4	BMP and activin membrane-bound inhibitor.	Putative Vitellogenin receptor.	0.590
APZ42_003083	APZ42_018078	A0A162CXH5	A0A164ZD60	BMP and activin membrane-bound inhibitor.	Low-density lipoprotein receptor-related protein 2.	0.522
APZ42_003083	APZ42_024105	A0A162CXH5	A0A164UH83	BMP and activin membrane-bound inhibitor.	Low-density lipoprotein receptor-related protein 2.	0.614
APZ42_003083	APZ42_024115	A0A162CXH5	A0A164UH25	BMP and activin membrane-bound inhibitor.	Low-density lipoprotein receptor-related protein 2.	0.614
APZ42_003083	APZ42_028941	A0A162CXH5	A0A164Q3Q6	BMP and activin membrane-bound inhibitor.	Low-density lipoprotein receptor-related protein 2.	0.614
APZ42_003083	APZ42_034126	A0A162CXH5	A0A0P4Y376	BMP and activin membrane-bound inhibitor.	Very Low-density lipoprotein receptor.	0.614
APZ42_003083	APZ42_034371	A0A162CXH5	A0A164K5K2	BMP and activin membrane-bound inhibitor.	Vitellogenin receptor.	0.590
APZ42_010850	APZ42_001817	A0A162T8L4	A0A164IQA7	Putative Vitellogenin receptor.	Low-density lipoprotein receptor-related protein 2.	0.624