(47 nodes) Mixed, incl. Helix-loop-helix DNA-binding domain superfamily, and LIM domain network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_015912	Retrovirus-related Pol Polyprotein from type-1 retrotransposable element R1. (206 aa)
	APZ42_026933	LIM domain only protein 3. (311 aa)
	APZ42_027432	Putative Transcription factor GATA-5. (623 aa)
	APZ42_027433	Gata transcription factor gatad. (776 aa)
	APZ42_023690	Heart-and neural crest derivatives-expressed protein. (289 aa)
	APZ42_016764	Uncharacterized protein. (560 aa)
	APZ42_027591	Extra macrochaetae-like protein. (113 aa)
	APZ42_027214	LIM domain only protein 3. (209 aa)
	APZ42_016781	Putative Helix-loop-helix protein 1. (255 aa)
	APZ42_028798	LIM homeobox transcription factor 1-beta. (504 aa)
	APZ42_018361	Regulators of stationary/sporulation gene expression domain-containing protein. (139 aa)
	APZ42_025330	Putative Fork head transcription factor. (616 aa)
	APZ42_011263	Short stature homeobox 2-like protein. (520 aa)
	APZ42_015061	Helix-loop-helix delilah-like protein. (322 aa)
	APZ42_013368	Putative Achaete-scute. (169 aa)
	APZ42_013052	Uncharacterized protein. (191 aa)
	APZ42_012209	Putative Myogenic factor 6. (316 aa)
	APZ42_011479	Putative Homeobox protein prophet of Pit-1. (371 aa)
	APZ42_011002	Putative T-box transcription factor TBX5-A. (631 aa)
	APZ42_007694	YqaJ domain-containing protein. (140 aa)
	APZ42_002871	Uncharacterized protein. (135 aa)
	APZ42_033887	GATA binding protein. (134 aa)
	APZ42_033712	Homeobox protein engrailed-like. (422 aa)
	APZ42_033710	Homeobox protein engrailed-like. (527 aa)
	APZ42_033104	Putative Homeobox expressed in ES cells 1. (628 aa)
	APZ42_030636	Putative Dorsocross2. (446 aa)
	APZ42_029942	Insulin gene enhancer protein ISL-2. (383 aa)
	APZ42_029519	Putative Insulin gene enhancer protein ISL-2. (500 aa)
	APZ42_029523	Putative Insulin gene enhancer protein ISL-1. (134 aa)
	APZ42_029020	Endothelial transcription factor GATA-2. (167 aa)
	APZ42_028043	LIM/homeobox protein Lhx4. (387 aa)
	APZ42_026950	LIM domain only protein 3. (302 aa)
	APZ42_026870	BHLH domain-containing protein. (276 aa)
	APZ42_025460	Putative Homeodomain protein. (433 aa)
	APZ42_024081	Extra macrochaetae-like protein. (153 aa)
	APZ42_023386	Putative Daughterless protein. (68 aa)
	APZ42_023139	Putative Transcription factor 23. (130 aa)
	APZ42_021614	Putative Single-stranded DNA-binding protein 3. (98 aa)
	APZ42_021503	Putative LIM/homeobox protein Lhx6. (669 aa)
	APZ42_020820	Putative Helix-loop-helix protein 1. (131 aa)
	APZ42_020805	Single-stranded DNA-binding protein 3. (149 aa)
	APZ42_020796	Putative Single-stranded DNA-binding protein 3. (284 aa)
	APZ42_018678	Putative Myocyte-specific enhancer factor 2A. (384 aa)
	APZ42_018714	LIM domain transcription factor LMO4. (421 aa)
	APZ42_016999	Achaete-scute complex protein T3. (291 aa)
	APZ42_016998	BHLH domain-containing protein. (406 aa)
	APZ42_016556	Transcription factor ETV7. (542 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002871	APZ42_007694	A0A164HZG8	A0A164F5B1	Uncharacterized protein.	YqaJ domain-containing protein.	0.440
APZ42_002871	APZ42_011263	A0A164HZG8	A0A0P6JFG8	Uncharacterized protein.	Short stature homeobox 2-like protein.	0.440
APZ42_002871	APZ42_011479	A0A164HZG8	A0A162SPG8	Uncharacterized protein.	Putative Homeobox protein prophet of Pit-1.	0.440
APZ42_002871	APZ42_012209	A0A164HZG8	A0A162S6M9	Uncharacterized protein.	Putative Myogenic factor 6.	0.925
APZ42_002871	APZ42_013052	A0A164HZG8	A0A162R839	Uncharacterized protein.	Uncharacterized protein.	0.440
APZ42_002871	APZ42_013368	A0A164HZG8	A0A162QXL0	Uncharacterized protein.	Putative Achaete-scute.	0.820
APZ42_002871	APZ42_015061	A0A164HZG8	A0A162P4U5	Uncharacterized protein.	Helix-loop-helix delilah-like protein.	0.650
APZ42_002871	APZ42_015912	A0A164HZG8	A0A0N8E326	Uncharacterized protein.	Retrovirus-related Pol Polyprotein from type-1 retrotransposable element R1.	0.745
APZ42_002871	APZ42_016764	A0A164HZG8	A0A0P5YY01	Uncharacterized protein.	Uncharacterized protein.	0.872
APZ42_002871	APZ42_016781	A0A164HZG8	A0A0P6BJA3	Uncharacterized protein.	Putative Helix-loop-helix protein 1.	0.872
APZ42_002871	APZ42_016998	A0A164HZG8	A0A165AA93	Uncharacterized protein.	BHLH domain-containing protein.	0.858
APZ42_002871	APZ42_016999	A0A164HZG8	A0A165AA79	Uncharacterized protein.	Achaete-scute complex protein T3.	0.858
APZ42_002871	APZ42_018678	A0A164HZG8	A0A164YRC6	Uncharacterized protein.	Putative Myocyte-specific enhancer factor 2A.	0.622
APZ42_002871	APZ42_018714	A0A164HZG8	A0A164YS73	Uncharacterized protein.	LIM domain transcription factor LMO4.	0.440
APZ42_002871	APZ42_020820	A0A164HZG8	A0A164XES4	Uncharacterized protein.	Putative Helix-loop-helix protein 1.	0.787
APZ42_002871	APZ42_021503	A0A164HZG8	A0A164WLD8	Uncharacterized protein.	Putative LIM/homeobox protein Lhx6.	0.440
APZ42_002871	APZ42_023139	A0A164HZG8	A0A164V7E4	Uncharacterized protein.	Putative Transcription factor 23.	0.735
APZ42_002871	APZ42_023690	A0A164HZG8	A0A0P5VRY9	Uncharacterized protein.	Heart-and neural crest derivatives-expressed protein.	0.745
APZ42_002871	APZ42_024081	A0A164HZG8	A0A164UFV0	Uncharacterized protein.	Extra macrochaetae-like protein.	0.877
APZ42_002871	APZ42_025460	A0A164HZG8	A0A164T1X2	Uncharacterized protein.	Putative Homeodomain protein.	0.440