(7 nodes) Mixed, incl. Somatic stem cell division, and Regulation of muscle tissue development network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_033101	Homeobox Nkx-3.1-like protein. (436 aa)
	EOG090X0511	Putative Neurogenin-3. (297 aa)
	APZ42_030996	Putative Zinc-finger transcriptional factor escargot protein. (489 aa)
	APZ42_011082	Homeobox protein ceh-30. (280 aa)
	APZ42_015359	Homeobox domain-containing protein. (227 aa)
	APZ42_015434	Putative Zinc finger E-box-binding homeobox 2. (217 aa)
	APZ42_021280	Putative Zinc finger E-box-binding homeobox 2. (837 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_015359	APZ42_030996	A0A162PEG4	A0A0P5WM31	Homeobox domain-containing protein.	Putative Zinc-finger transcriptional factor escargot protein.	0.510
APZ42_015359	EOG090X0511	A0A162PEG4	A0A0P5EJ98	Homeobox domain-containing protein.	Putative Neurogenin-3.	0.419
APZ42_030996	APZ42_015359	A0A0P5WM31	A0A162PEG4	Putative Zinc-finger transcriptional factor escargot protein.	Homeobox domain-containing protein.	0.510
APZ42_030996	EOG090X0511	A0A0P5WM31	A0A0P5EJ98	Putative Zinc-finger transcriptional factor escargot protein.	Putative Neurogenin-3.	0.554
EOG090X0511	APZ42_015359	A0A0P5EJ98	A0A162PEG4	Putative Neurogenin-3.	Homeobox domain-containing protein.	0.419
EOG090X0511	APZ42_030996	A0A0P5EJ98	A0A0P5WM31	Putative Neurogenin-3.	Putative Zinc-finger transcriptional factor escargot protein.	0.554