(6 nodes) START domain, and Glycolipid transfer protein (GLTP) network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_020760	Glycolipid transfer protein domain-containing protein. (212 aa)
	APZ42_032520	Uncharacterized protein. (1125 aa)
	APZ42_015141	Serine/threonine-protein kinase D2. (836 aa)
	APZ42_032456	Casein kinase I. (625 aa)
	APZ42_032514	Collagen type IV alpha-3-binding protein. (623 aa)
	APZ42_022338	PCTP-like protein. (538 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_015141	APZ42_020760	A0A162P8H4	A0A0P4ZMT6	Serine/threonine-protein kinase D2.	Glycolipid transfer protein domain-containing protein.	0.601
APZ42_020760	APZ42_015141	A0A0P4ZMT6	A0A162P8H4	Glycolipid transfer protein domain-containing protein.	Serine/threonine-protein kinase D2.	0.601
APZ42_022338	APZ42_032514	A0A164VEN6	A0A164LLT3	PCTP-like protein.	Collagen type IV alpha-3-binding protein.	0.567
APZ42_022338	APZ42_032520	A0A164VEN6	A0A162D8L2	PCTP-like protein.	Uncharacterized protein.	0.566
APZ42_032456	APZ42_032514	A0A164LKW0	A0A164LLT3	Casein kinase I.	Collagen type IV alpha-3-binding protein.	0.838
APZ42_032514	APZ42_022338	A0A164LLT3	A0A164VEN6	Collagen type IV alpha-3-binding protein.	PCTP-like protein.	0.567
APZ42_032514	APZ42_032456	A0A164LLT3	A0A164LKW0	Collagen type IV alpha-3-binding protein.	Casein kinase I.	0.838
APZ42_032514	APZ42_032520	A0A164LLT3	A0A162D8L2	Collagen type IV alpha-3-binding protein.	Uncharacterized protein.	0.556
APZ42_032520	APZ42_022338	A0A162D8L2	A0A164VEN6	Uncharacterized protein.	PCTP-like protein.	0.566
APZ42_032520	APZ42_032514	A0A162D8L2	A0A164LLT3	Uncharacterized protein.	Collagen type IV alpha-3-binding protein.	0.556