(36 nodes) Mixed, incl. mRNA 3-UTR binding, and PAP/25A-associated network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_033994	Methyltransf_21 domain-containing protein. (316 aa)
	APZ42_016143	Growth and transformation-dependent protein. (129 aa)
	APZ42_032222	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial. (157 aa)
	APZ42_016913	Pentatricopeptide repeat-containing protein 2, mitochondrial. (403 aa)
	APZ42_031985	Putative 7SK snRNA methylphosphate capping enzyme. (542 aa)
	APZ42_019854	Squamous cell carcinoma antigen recognized by T-cells. (863 aa)
	APZ42_024249	Uncharacterized protein. (488 aa)
	APZ42_012392	Putative FAST kinase domain-containing protein 1. (946 aa)
	APZ42_017394	Putative Poly RNA polymerase gld-2 A. (582 aa)
	APZ42_012434	Solute carrier family 35 member F1. (571 aa)
	APZ42_018665	Leucine-rich PPR motif-containing protein, mitochondrial. (1364 aa)
	APZ42_019357	Protein Smaug. (954 aa)
	APZ42_023977	SAM domain-containing protein. (444 aa)
	APZ42_025710	OCIA domain-containing protein 1. (260 aa)
	APZ42_015620	Poly(A) RNA polymerase, mitochondrial. (726 aa)
	APZ42_015266	RNA-binding protein orb2. (193 aa)
	APZ42_013892	Bicaudal C protein. (372 aa)
	APZ42_013016	SAM domain-containing protein. (1248 aa)
	APZ42_012842	CCHC-type domain-containing protein. (1377 aa)
	APZ42_011426	Bicaudal-c-like protein. (341 aa)
	APZ42_010865	Insulin growth factor 2 mRNA-binding 2-like protein. (593 aa)
	APZ42_007420	RNA-binding protein lin-28. (114 aa)
	APZ42_033672	SAM domain-containing protein. (475 aa)
	APZ42_033252	Putative Cytoplasmic polyadenylation element-binding protein 1. (622 aa)
	APZ42_032151	Poly(A) RNA polymerase, mitochondrial. (645 aa)
	APZ42_031870	Spondin-1. (671 aa)
	APZ42_028504	Insulin growth factor 2 mRNA-binding 3-A-like protein. (179 aa)
	APZ42_027020	Cold shock domain-containing protein. (156 aa)
	APZ42_025428	SAM_Exu domain-containing protein. (519 aa)
	APZ42_023981	SAM domain-containing protein. (396 aa)
	APZ42_022865	Putative Bruno-3. (377 aa)
	APZ42_021964	Putative Encore. (328 aa)
	APZ42_021626	CUGBP ELAV family member 2. (81 aa)
	APZ42_020345	Constitutive coactivator of PPAR-gamma protein 1. (939 aa)
	APZ42_016750	Fibronectin type-III domain-containing protein 3A. (2161 aa)
	APZ42_017018	Putative Encore. (769 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_007420	APZ42_010865	A0A164FAU2	A0A162T8K0	RNA-binding protein lin-28.	Insulin growth factor 2 mRNA-binding 2-like protein.	0.474
APZ42_007420	APZ42_012842	A0A164FAU2	A0A162REW4	RNA-binding protein lin-28.	CCHC-type domain-containing protein.	0.591
APZ42_007420	APZ42_015620	A0A164FAU2	A0A162NS37	RNA-binding protein lin-28.	Poly(A) RNA polymerase, mitochondrial.	0.458
APZ42_007420	APZ42_017394	A0A164FAU2	A0A0P5YZV9	RNA-binding protein lin-28.	Putative Poly RNA polymerase gld-2 A.	0.476
APZ42_007420	APZ42_028504	A0A164FAU2	A0A164QG70	RNA-binding protein lin-28.	Insulin growth factor 2 mRNA-binding 3-A-like protein.	0.474
APZ42_010865	APZ42_007420	A0A162T8K0	A0A164FAU2	Insulin growth factor 2 mRNA-binding 2-like protein.	RNA-binding protein lin-28.	0.474
APZ42_012434	APZ42_013892	A0A0P5ZEJ8	A0A162QEQ6	Solute carrier family 35 member F1.	Bicaudal C protein.	0.569
APZ42_012434	APZ42_016750	A0A0P5ZEJ8	A0A165A4E7	Solute carrier family 35 member F1.	Fibronectin type-III domain-containing protein 3A.	0.570
APZ42_012434	APZ42_033672	A0A0P5ZEJ8	A0A164KS76	Solute carrier family 35 member F1.	SAM domain-containing protein.	0.412
APZ42_012842	APZ42_007420	A0A162REW4	A0A164FAU2	CCHC-type domain-containing protein.	RNA-binding protein lin-28.	0.591
APZ42_012842	APZ42_019854	A0A162REW4	A0A0P5SLV3	CCHC-type domain-containing protein.	Squamous cell carcinoma antigen recognized by T-cells.	0.505
APZ42_013892	APZ42_012434	A0A162QEQ6	A0A0P5ZEJ8	Bicaudal C protein.	Solute carrier family 35 member F1.	0.569
APZ42_013892	APZ42_016750	A0A162QEQ6	A0A165A4E7	Bicaudal C protein.	Fibronectin type-III domain-containing protein 3A.	0.560
APZ42_013892	APZ42_017394	A0A162QEQ6	A0A0P5YZV9	Bicaudal C protein.	Putative Poly RNA polymerase gld-2 A.	0.516
APZ42_013892	APZ42_021626	A0A162QEQ6	A0A164WIC1	Bicaudal C protein.	CUGBP ELAV family member 2.	0.485
APZ42_013892	APZ42_022865	A0A162QEQ6	A0A164VWP4	Bicaudal C protein.	Putative Bruno-3.	0.522
APZ42_015266	APZ42_017394	A0A162PC20	A0A0P5YZV9	RNA-binding protein orb2.	Putative Poly RNA polymerase gld-2 A.	0.565
APZ42_015266	APZ42_033252	A0A162PC20	A0A164LA49	RNA-binding protein orb2.	Putative Cytoplasmic polyadenylation element-binding protein 1.	0.824
APZ42_015620	APZ42_007420	A0A162NS37	A0A164FAU2	Poly(A) RNA polymerase, mitochondrial.	RNA-binding protein lin-28.	0.458
APZ42_015620	APZ42_019854	A0A162NS37	A0A0P5SLV3	Poly(A) RNA polymerase, mitochondrial.	Squamous cell carcinoma antigen recognized by T-cells.	0.683