(16 nodes) Symport network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_022380	Sodium-dependent serotonin transporter. (506 aa)
	APZ42_026492	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (773 aa)
	APZ42_015956	Transporter. (264 aa)
	APZ42_008391	Transporter. (91 aa)
	APZ42_001375	Transporter. (377 aa)
	APZ42_032240	Putative Transporter. (347 aa)
	APZ42_031548	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (412 aa)
	APZ42_027855	Amino acid transporter. (527 aa)
	APZ42_023910	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (888 aa)
	APZ42_023036	Transporter. (245 aa)
	APZ42_022468	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (176 aa)
	APZ42_021134	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (667 aa)
	APZ42_020509	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (437 aa)
	APZ42_018411	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (300 aa)
	APZ42_018039	MARVEL domain-containing protein. (230 aa)
	APZ42_016500	N-acetylneuraminate lyase; Belongs to the DapA family. (330 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001375	APZ42_015956	A0A164J136	A0A162NHA4	Transporter.	Transporter.	0.552
APZ42_001375	APZ42_018039	A0A164J136	A0A164ZIA1	Transporter.	MARVEL domain-containing protein.	0.554
APZ42_001375	APZ42_022380	A0A164J136	A0A0P4YVT2	Transporter.	Sodium-dependent serotonin transporter.	0.600
APZ42_001375	APZ42_022468	A0A164J136	A0A164VJG1	Transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.940
APZ42_001375	APZ42_026492	A0A164J136	A0A0P5AI26	Transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.524
APZ42_001375	APZ42_027855	A0A164J136	A0A164R0M1	Transporter.	Amino acid transporter.	0.567
APZ42_008391	APZ42_015956	A0A164ENR0	A0A162NHA4	Transporter.	Transporter.	0.735
APZ42_008391	APZ42_018039	A0A164ENR0	A0A164ZIA1	Transporter.	MARVEL domain-containing protein.	0.554
APZ42_008391	APZ42_018411	A0A164ENR0	A0A164Z6E4	Transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.490
APZ42_008391	APZ42_022380	A0A164ENR0	A0A0P4YVT2	Transporter.	Sodium-dependent serotonin transporter.	0.745
APZ42_008391	APZ42_022468	A0A164ENR0	A0A164VJG1	Transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.464
APZ42_008391	APZ42_026492	A0A164ENR0	A0A0P5AI26	Transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.534
APZ42_008391	APZ42_027855	A0A164ENR0	A0A164R0M1	Transporter.	Amino acid transporter.	0.567
APZ42_008391	APZ42_031548	A0A164ENR0	A0A164MRX7	Transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.499
APZ42_015956	APZ42_001375	A0A162NHA4	A0A164J136	Transporter.	Transporter.	0.552
APZ42_015956	APZ42_008391	A0A162NHA4	A0A164ENR0	Transporter.	Transporter.	0.735
APZ42_015956	APZ42_018039	A0A162NHA4	A0A164ZIA1	Transporter.	MARVEL domain-containing protein.	0.557
APZ42_015956	APZ42_018411	A0A162NHA4	A0A164Z6E4	Transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.968
APZ42_015956	APZ42_020509	A0A162NHA4	A0A164X6I1	Transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.746
APZ42_015956	APZ42_021134	A0A162NHA4	A0A164X1F9	Transporter.	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.	0.542