(40 nodes) Mixed, incl. Major facilitator superfamily associated domain, and Stem cell fate commitment network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_034437	Feline leukemia virus subgroup C receptor-related protein. (473 aa)
	APZ42_017881	Feline leukemia virus subgroup C receptor-related protein. (479 aa)
	APZ42_012194	MFS_1_like domain-containing protein. (622 aa)
	APZ42_020167	Methyltransf_21 domain-containing protein. (330 aa)
	APZ42_011859	Major facilitator superfamily domain-containing protein 6-A. (852 aa)
	APZ42_032447	Putative Basigin. (359 aa)
	APZ42_026976	Major facilitator superfamily domain-containing protein 6. (651 aa)
	APZ42_018097	Cystinosin. (398 aa)
	APZ42_028331	Lysosomal protein NCU-G1-A. (412 aa)
	APZ42_012086	Major facilitator superfamily domain-containing protein 1. (545 aa)
	APZ42_026981	Major facilitator superfamily domain-containing protein 8. (573 aa)
	APZ42_020743	Synaptic vesicle 2-related protein. (565 aa)
	APZ42_013699	Solute carrier family 2, facilitated glucose transporter member. (626 aa)
	APZ42_022524	TAPT1 protein. (475 aa)
	APZ42_022799	Methyltransf_21 domain-containing protein. (374 aa)
	APZ42_020795	Battenin. (426 aa)
	APZ42_032733	Protein unc-93 A. (455 aa)
	APZ42_014893	MFS domain-containing protein. (469 aa)
	APZ42_015458	MFS domain-containing protein. (485 aa)
	APZ42_012646	Methyltransf_21 domain-containing protein. (262 aa)
	APZ42_012152	UPF0160 protein MYG1, mitochondrial. (366 aa)
	APZ42_012244	Renalase. (281 aa)
	APZ42_034454	MFS-type transporter C09D4.1-like protein. (480 aa)
	APZ42_034447	MFS-type transporter C09D4.1-like protein. (506 aa)
	APZ42_030805	Methyltransf_21 domain-containing protein. (257 aa)
	APZ42_029455	Acetyl-Coenzyme A transporter 1. (495 aa)
	APZ42_028546	Uncharacterized protein. (99 aa)
	APZ42_028387	Molybdate-anion transporter. (455 aa)
	APZ42_026980	Major facilitator superfamily domain-containing protein 8. (530 aa)
	APZ42_025685	Major facilitator superfamily domain-containing protein 6. (449 aa)
	APZ42_025683	Sugar baby. (1855 aa)
	APZ42_023050	Major facilitator superfamily domain-containing protein. (515 aa)
	APZ42_022684	Putative Macrophage MHC class I receptor 2 protein. (795 aa)
	APZ42_022690	Putative Macrophage MHC class I receptor 2 protein. (606 aa)
	APZ42_022813	Methyltransf_21 domain-containing protein. (334 aa)
	APZ42_020654	Asteroid protein. (569 aa)
	APZ42_019714	Uncharacterized protein. (354 aa)
	EOG090X09U7	Major facilitator superfamily domain-containing protein 10. (441 aa)
	APZ42_017270	Macrophage MHC class I receptor 2 protein. (708 aa)
	APZ42_017482	SUN domain-containing protein. (995 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011859	APZ42_020743	A0A0P5J3C0	A0A0P6DTQ1	Major facilitator superfamily domain-containing protein 6-A.	Synaptic vesicle 2-related protein.	0.541
APZ42_011859	APZ42_032733	A0A0P5J3C0	A0A162D8Z8	Major facilitator superfamily domain-containing protein 6-A.	Protein unc-93 A.	0.569
APZ42_011859	EOG090X09U7	A0A0P5J3C0	A0A164YZE9	Major facilitator superfamily domain-containing protein 6-A.	Major facilitator superfamily domain-containing protein 10.	0.571
APZ42_012152	APZ42_028387	A0A162S5M2	A0A164QRS4	UPF0160 protein MYG1, mitochondrial.	Molybdate-anion transporter.	0.535
APZ42_017482	APZ42_022524	A0A164ZWJ9	A0A162C7G9	SUN domain-containing protein.	TAPT1 protein.	0.858
APZ42_018097	APZ42_020795	A0A0P5UIF3	A0A162CLB2	Cystinosin.	Battenin.	0.509
APZ42_019714	APZ42_028546	A0A164Y493	A0A164QFL1	Uncharacterized protein.	Uncharacterized protein.	0.504
APZ42_020654	APZ42_026980	A0A164XAW9	A0A164RVF4	Asteroid protein.	Major facilitator superfamily domain-containing protein 8.	0.495
APZ42_020654	APZ42_026981	A0A164XAW9	A0A0P5ZH60	Asteroid protein.	Major facilitator superfamily domain-containing protein 8.	0.495
APZ42_020743	APZ42_011859	A0A0P6DTQ1	A0A0P5J3C0	Synaptic vesicle 2-related protein.	Major facilitator superfamily domain-containing protein 6-A.	0.541
APZ42_020743	APZ42_032733	A0A0P6DTQ1	A0A162D8Z8	Synaptic vesicle 2-related protein.	Protein unc-93 A.	0.550
APZ42_020743	EOG090X09U7	A0A0P6DTQ1	A0A164YZE9	Synaptic vesicle 2-related protein.	Major facilitator superfamily domain-containing protein 10.	0.571
APZ42_020795	APZ42_018097	A0A162CLB2	A0A0P5UIF3	Battenin.	Cystinosin.	0.509
APZ42_020795	APZ42_026980	A0A162CLB2	A0A164RVF4	Battenin.	Major facilitator superfamily domain-containing protein 8.	0.455
APZ42_020795	APZ42_026981	A0A162CLB2	A0A0P5ZH60	Battenin.	Major facilitator superfamily domain-containing protein 8.	0.455
APZ42_022524	APZ42_017482	A0A162C7G9	A0A164ZWJ9	TAPT1 protein.	SUN domain-containing protein.	0.858
APZ42_026980	APZ42_020654	A0A164RVF4	A0A164XAW9	Major facilitator superfamily domain-containing protein 8.	Asteroid protein.	0.495
APZ42_026980	APZ42_020795	A0A164RVF4	A0A162CLB2	Major facilitator superfamily domain-containing protein 8.	Battenin.	0.455
APZ42_026980	APZ42_032447	A0A164RVF4	A0A0P5M2P7	Major facilitator superfamily domain-containing protein 8.	Putative Basigin.	0.469
APZ42_026981	APZ42_020654	A0A0P5ZH60	A0A164XAW9	Major facilitator superfamily domain-containing protein 8.	Asteroid protein.	0.495