(70 nodes) FCERI mediated MAPK activation, and Bax inhibitor 1-related network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_034499	Schwannomin-interacting protein. (315 aa)
	APZ42_013143	N-methyl-D-aspartate receptor-associated protein; Belongs to the BI1 family. (296 aa)
	APZ42_022753	Neural cell adhesion molecule L1. (336 aa)
	APZ42_027640	DDE Tnp4 domain-containing protein. (404 aa)
	APZ42_031780	PPPDE peptidase domain-containing protein 1. (203 aa)
	APZ42_028918	Protein F14D2.9. (353 aa)
	APZ42_004802	DDE Tnp4 domain-containing protein. (99 aa)
	APZ42_020464	Uncharacterized protein. (517 aa)
	APZ42_030326	Uncharacterized protein. (567 aa)
	APZ42_028412	DDE Tnp4 domain-containing protein. (110 aa)
	APZ42_024952	Uncharacterized protein. (627 aa)
	APZ42_015375	BAX inhibitor 1; Belongs to the BI1 family. (244 aa)
	APZ42_014049	Nuclease HARBI1-like protein. (341 aa)
	APZ42_013169	Protein lifeguard 4; Belongs to the BI1 family. (293 aa)
	APZ42_013068	Nuclease HARBI1-like protein. (329 aa)
	APZ42_013034	DDE Tnp4 domain-containing protein. (397 aa)
	APZ42_012721	DDE Tnp4 domain-containing protein. (199 aa)
	APZ42_012573	DDE Tnp4 domain-containing protein. (341 aa)
	APZ42_012576	F14D2.9-like protein. (283 aa)
	APZ42_011944	Putative Nuclease HARBI1. (328 aa)
	APZ42_009684	F14D2.9-like protein. (124 aa)
	APZ42_008920	Uncharacterized protein. (226 aa)
	APZ42_008487	DDE Tnp4 domain-containing protein. (176 aa)
	APZ42_007530	DDE Tnp4 domain-containing protein. (119 aa)
	APZ42_006764	DDE Tnp4 domain-containing protein. (151 aa)
	APZ42_006501	Uncharacterized protein. (121 aa)
	APZ42_005096	Uncharacterized protein. (137 aa)
	APZ42_004803	DDE Tnp4 domain-containing protein. (104 aa)
	APZ42_004543	DDE Tnp4 domain-containing protein. (129 aa)
	APZ42_004343	Protein F14D2.9. (285 aa)
	APZ42_002245	Uncharacterized protein. (174 aa)
	APZ42_002080	F14D2.9-like protein. (238 aa)
	APZ42_001520	Urea transporter 2. (252 aa)
	APZ42_001408	DDE Tnp4 domain-containing protein. (158 aa)
	APZ42_001027	DDE Tnp4 domain-containing protein. (102 aa)
	APZ42_000680	Uncharacterized protein. (167 aa)
	APZ42_000308	Uncharacterized protein. (92 aa)
	APZ42_033946	Uncharacterized protein. (116 aa)
	APZ42_033922	Uncharacterized protein. (120 aa)
	APZ42_033907	DDE Tnp4 domain-containing protein. (443 aa)
	APZ42_033652	Growth hormone-inducible transmembrane protein; Belongs to the BI1 family. (337 aa)
	APZ42_033612	DDE Tnp4 domain-containing protein. (271 aa)
	APZ42_033571	Uncharacterized protein. (164 aa)
	APZ42_033446	DDE Tnp4 domain-containing protein. (293 aa)
	APZ42_033192	F14D2.9-like protein. (138 aa)
	APZ42_033157	Protein F14D2.9. (387 aa)
	APZ42_032039	Uncharacterized protein. (272 aa)
	APZ42_032046	DDE Tnp4 domain-containing protein. (259 aa)
	APZ42_031592	Uncharacterized protein. (1100 aa)
	APZ42_031356	DDE Tnp4 domain-containing protein. (418 aa)
	APZ42_031332	F14D2.9-like protein. (243 aa)
	APZ42_031281	F14D2.9-like protein. (126 aa)
	APZ42_031113	DDE Tnp4 domain-containing protein. (459 aa)
	APZ42_030738	DDE Tnp4 domain-containing protein. (343 aa)
	APZ42_030509	BSD domain-containing protein. (343 aa)
	APZ42_030394	F14D2.9-like protein. (354 aa)
	APZ42_029920	F57G4.9-like protein. (141 aa)
	APZ42_029622	DDE Tnp4 domain-containing protein. (302 aa)
	APZ42_029264	Putative Nuclease HARBI1. (377 aa)
	APZ42_028934	DDE Tnp4 domain-containing protein. (201 aa)
	APZ42_028920	Putative Nuclease HARBI1. (375 aa)
	APZ42_027842	DDE Tnp4 domain-containing protein. (291 aa)
	APZ42_027817	F14D2.9-like protein. (226 aa)
	APZ42_027768	F14D2.9-like protein. (531 aa)
	APZ42_026246	TE: Transposase. (506 aa)
	APZ42_026007	DDE Tnp4 domain-containing protein. (334 aa)
	APZ42_025102	Uncharacterized protein. (181 aa)
	APZ42_023907	Down syndrome cell adhesion molecule 1-like protein. (2171 aa)
	APZ42_021953	Uncharacterized protein. (345 aa)
	APZ42_017386	DUF862 domain-containing protein. (446 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000308	APZ42_001408	A0A164JRQ4	A0A164J079	Uncharacterized protein.	DDE Tnp4 domain-containing protein.	0.416
APZ42_000308	APZ42_014049	A0A164JRQ4	A0A162QAM5	Uncharacterized protein.	Nuclease HARBI1-like protein.	0.474
APZ42_000308	APZ42_028412	A0A164JRQ4	A0A162D722	Uncharacterized protein.	DDE Tnp4 domain-containing protein.	0.448
APZ42_000680	APZ42_004803	A0A164JGN5	A0A164GU55	Uncharacterized protein.	DDE Tnp4 domain-containing protein.	0.414
APZ42_001408	APZ42_000308	A0A164J079	A0A164JRQ4	DDE Tnp4 domain-containing protein.	Uncharacterized protein.	0.416
APZ42_001408	APZ42_008487	A0A164J079	A0A164ELW6	DDE Tnp4 domain-containing protein.	DDE Tnp4 domain-containing protein.	0.443
APZ42_001408	APZ42_012573	A0A164J079	A0A162RMR8	DDE Tnp4 domain-containing protein.	DDE Tnp4 domain-containing protein.	0.469
APZ42_002080	APZ42_006501	A0A164IIV9	A0A164FV49	F14D2.9-like protein.	Uncharacterized protein.	0.402
APZ42_002080	APZ42_013034	A0A164IIV9	A0A162R8N0	F14D2.9-like protein.	DDE Tnp4 domain-containing protein.	0.447
APZ42_004343	APZ42_006501	A0A164H4B7	A0A164FV49	Protein F14D2.9.	Uncharacterized protein.	0.438
APZ42_004802	APZ42_005096	A0A162BZN6	A0A164GNE1	DDE Tnp4 domain-containing protein.	Uncharacterized protein.	0.405
APZ42_004803	APZ42_000680	A0A164GU55	A0A164JGN5	DDE Tnp4 domain-containing protein.	Uncharacterized protein.	0.414
APZ42_005096	APZ42_004802	A0A164GNE1	A0A162BZN6	Uncharacterized protein.	DDE Tnp4 domain-containing protein.	0.405
APZ42_005096	APZ42_033192	A0A164GNE1	A0A164LB96	Uncharacterized protein.	F14D2.9-like protein.	0.504
APZ42_006501	APZ42_002080	A0A164FV49	A0A164IIV9	Uncharacterized protein.	F14D2.9-like protein.	0.402
APZ42_006501	APZ42_004343	A0A164FV49	A0A164H4B7	Uncharacterized protein.	Protein F14D2.9.	0.438
APZ42_006501	APZ42_006764	A0A164FV49	A0A164FPZ2	Uncharacterized protein.	DDE Tnp4 domain-containing protein.	0.437
APZ42_006501	APZ42_011944	A0A164FV49	A0A162SCQ4	Uncharacterized protein.	Putative Nuclease HARBI1.	0.436
APZ42_006501	APZ42_013034	A0A164FV49	A0A162R8N0	Uncharacterized protein.	DDE Tnp4 domain-containing protein.	0.450
APZ42_006501	APZ42_013068	A0A164FV49	A0A162R6J1	Uncharacterized protein.	Nuclease HARBI1-like protein.	0.415