(5 nodes) O-glycan processing, core 1, and Fringe-like network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_015951	Hexosyltransferase. (464 aa)
	APZ42_010572	Uncharacterized protein. (113 aa)
	APZ42_008295	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1. (181 aa)
	APZ42_000934	Uncharacterized protein. (177 aa)
	APZ42_022807	Uncharacterized protein. (324 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000934	APZ42_010572	A0A164JAB0	A0A162CWX2	Uncharacterized protein.	Uncharacterized protein.	0.504
APZ42_000934	APZ42_022807	A0A164JAB0	A0A164VUV5	Uncharacterized protein.	Uncharacterized protein.	0.516
APZ42_008295	APZ42_010572	A0A162D0Q4	A0A162CWX2	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	Uncharacterized protein.	0.454
APZ42_008295	APZ42_015951	A0A162D0Q4	A0A0P5SZH8	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	Hexosyltransferase.	0.472
APZ42_010572	APZ42_000934	A0A162CWX2	A0A164JAB0	Uncharacterized protein.	Uncharacterized protein.	0.504
APZ42_010572	APZ42_008295	A0A162CWX2	A0A162D0Q4	Uncharacterized protein.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	0.454
APZ42_010572	APZ42_015951	A0A162CWX2	A0A0P5SZH8	Uncharacterized protein.	Hexosyltransferase.	0.472
APZ42_010572	APZ42_022807	A0A162CWX2	A0A164VUV5	Uncharacterized protein.	Uncharacterized protein.	0.516
APZ42_015951	APZ42_008295	A0A0P5SZH8	A0A162D0Q4	Hexosyltransferase.	Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.	0.472
APZ42_015951	APZ42_010572	A0A0P5SZH8	A0A162CWX2	Hexosyltransferase.	Uncharacterized protein.	0.472
APZ42_015951	APZ42_022807	A0A0P5SZH8	A0A164VUV5	Hexosyltransferase.	Uncharacterized protein.	0.472
APZ42_022807	APZ42_000934	A0A164VUV5	A0A164JAB0	Uncharacterized protein.	Uncharacterized protein.	0.516
APZ42_022807	APZ42_010572	A0A164VUV5	A0A162CWX2	Uncharacterized protein.	Uncharacterized protein.	0.516
APZ42_022807	APZ42_015951	A0A164VUV5	A0A0P5SZH8	Uncharacterized protein.	Hexosyltransferase.	0.472