16 items (Daphnia magna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EOG090X09LQ	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (257 aa)
	APZ42_033484	Proteasome subunit beta. (234 aa)
	APZ42_016295	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (242 aa)
	APZ42_021386	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (255 aa)
	EOG090X0CE5	Proteasome subunit beta. (205 aa)
	APZ42_021635	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (234 aa)
	APZ42_025595	Proteasome subunit beta. (226 aa)
	APZ42_034381	26S proteasome non-ATPase regulatory subunit 8. (265 aa)
	APZ42_026380	Proteasome subunit beta; Belongs to the peptidase T1B family. (262 aa)
	APZ42_022784	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (285 aa)
	APZ42_019436	26S Protease regulatory subunit 4; Belongs to the AAA ATPase family. (442 aa)
	APZ42_015341	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (250 aa)
	APZ42_013012	Proteasome subunit beta. (274 aa)
	APZ42_029320	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (246 aa)
	APZ42_028630	Proteasome subunit beta type-1. (230 aa)
	EOG090X08NC	26S proteasome non-ATPase regulatory subunit 4. (388 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_013012	APZ42_015341	A0A162R9G9	A0A162PED7	Proteasome subunit beta.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
APZ42_013012	APZ42_016295	A0A162R9G9	A0A0P5G816	Proteasome subunit beta.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
APZ42_013012	APZ42_019436	A0A162R9G9	A0A0P6EFC2	Proteasome subunit beta.	26S Protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.998
APZ42_013012	APZ42_021386	A0A162R9G9	A0A0P5IS80	Proteasome subunit beta.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
APZ42_013012	APZ42_021635	A0A162R9G9	A0A0P5V4U2	Proteasome subunit beta.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
APZ42_013012	APZ42_022784	A0A162R9G9	A0A0P6D0I8	Proteasome subunit beta.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
APZ42_013012	APZ42_025595	A0A162R9G9	A0A0P5VFR9	Proteasome subunit beta.	Proteasome subunit beta.	0.999
APZ42_013012	APZ42_026380	A0A162R9G9	A0A0P5Z2Y6	Proteasome subunit beta.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
APZ42_013012	APZ42_028630	A0A162R9G9	A0A164Q8S6	Proteasome subunit beta.	Proteasome subunit beta type-1.	0.999
APZ42_013012	APZ42_029320	A0A162R9G9	A0A164PR99	Proteasome subunit beta.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
APZ42_013012	APZ42_033484	A0A162R9G9	A0A0N8DTF6	Proteasome subunit beta.	Proteasome subunit beta.	0.999
APZ42_013012	APZ42_034381	A0A162R9G9	A0A0P5W793	Proteasome subunit beta.	26S proteasome non-ATPase regulatory subunit 8.	0.997
APZ42_013012	EOG090X08NC	A0A162R9G9	A0A164QMT1	Proteasome subunit beta.	26S proteasome non-ATPase regulatory subunit 4.	0.999
APZ42_013012	EOG090X09LQ	A0A162R9G9	A0A0N8CTG7	Proteasome subunit beta.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
APZ42_013012	EOG090X0CE5	A0A162R9G9	A0A0P5T212	Proteasome subunit beta.	Proteasome subunit beta.	0.999
APZ42_015341	APZ42_013012	A0A162PED7	A0A162R9G9	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	Proteasome subunit beta.	0.999
APZ42_015341	APZ42_016295	A0A162PED7	A0A0P5G816	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
APZ42_015341	APZ42_019436	A0A162PED7	A0A0P6EFC2	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	26S Protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
APZ42_015341	APZ42_021386	A0A162PED7	A0A0P5IS80	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999
APZ42_015341	APZ42_021635	A0A162PED7	A0A0P5V4U2	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.999