(5 nodes) Mixed, incl. Parallel beta-helix repeat, and Leucine-rich repeat - CC (cysteine-containing) subfamily network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_011883	F-box/LRR-repeat protein 20. (431 aa)
	APZ42_028578	F-box only protein 9. (439 aa)
	APZ42_027425	F-box/WD repeat-containing protein 5. (643 aa)
	APZ42_023947	F-box only protein 25. (509 aa)
	APZ42_019358	F-box only protein 11. (937 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011883	APZ42_019358	A0A0P5ZA17	A0A164YID3	F-box/LRR-repeat protein 20.	F-box only protein 11.	0.702
APZ42_011883	APZ42_023947	A0A0P5ZA17	A0A164UC52	F-box/LRR-repeat protein 20.	F-box only protein 25.	0.653
APZ42_011883	APZ42_027425	A0A0P5ZA17	A0A164RLJ3	F-box/LRR-repeat protein 20.	F-box/WD repeat-containing protein 5.	0.400
APZ42_011883	APZ42_028578	A0A0P5ZA17	A0A164Q6W5	F-box/LRR-repeat protein 20.	F-box only protein 9.	0.405
APZ42_019358	APZ42_011883	A0A164YID3	A0A0P5ZA17	F-box only protein 11.	F-box/LRR-repeat protein 20.	0.702
APZ42_019358	APZ42_023947	A0A164YID3	A0A164UC52	F-box only protein 11.	F-box only protein 25.	0.634
APZ42_019358	APZ42_027425	A0A164YID3	A0A164RLJ3	F-box only protein 11.	F-box/WD repeat-containing protein 5.	0.570
APZ42_019358	APZ42_028578	A0A164YID3	A0A164Q6W5	F-box only protein 11.	F-box only protein 9.	0.665
APZ42_023947	APZ42_011883	A0A164UC52	A0A0P5ZA17	F-box only protein 25.	F-box/LRR-repeat protein 20.	0.653
APZ42_023947	APZ42_019358	A0A164UC52	A0A164YID3	F-box only protein 25.	F-box only protein 11.	0.634
APZ42_023947	APZ42_027425	A0A164UC52	A0A164RLJ3	F-box only protein 25.	F-box/WD repeat-containing protein 5.	0.585
APZ42_023947	APZ42_028578	A0A164UC52	A0A164Q6W5	F-box only protein 25.	F-box only protein 9.	0.479
APZ42_027425	APZ42_011883	A0A164RLJ3	A0A0P5ZA17	F-box/WD repeat-containing protein 5.	F-box/LRR-repeat protein 20.	0.400
APZ42_027425	APZ42_019358	A0A164RLJ3	A0A164YID3	F-box/WD repeat-containing protein 5.	F-box only protein 11.	0.570
APZ42_027425	APZ42_023947	A0A164RLJ3	A0A164UC52	F-box/WD repeat-containing protein 5.	F-box only protein 25.	0.585
APZ42_028578	APZ42_011883	A0A164Q6W5	A0A0P5ZA17	F-box only protein 9.	F-box/LRR-repeat protein 20.	0.405
APZ42_028578	APZ42_019358	A0A164Q6W5	A0A164YID3	F-box only protein 9.	F-box only protein 11.	0.665
APZ42_028578	APZ42_023947	A0A164Q6W5	A0A164UC52	F-box only protein 9.	F-box only protein 25.	0.479