(15 nodes) Mixed, incl. UBX domain, and Cellular response to virus network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_028966	UBX domain-containing protein 4. (453 aa)
	APZ42_021695	Ubiquitin thioesterase OTU1. (311 aa)
	APZ42_025760	Spermatogenesis-associated 5 protein 1-like protein. (808 aa)
	APZ42_020232	Spermatogenesis-associated protein 5 protein 1. (705 aa)
	APZ42_020501	UBX domain-containing protein 6. (432 aa)
	APZ42_032869	UBX domain-containing protein 7. (477 aa)
	APZ42_028072	NSFL1 cofactor p47. (374 aa)
	APZ42_012975	Ubiquitin conjugation factor E4 A. (982 aa)
	APZ42_008911	Ubiquitin fusion degradation protein 1. (122 aa)
	APZ42_000771	Ubiquitin fusion degradation protein 1. (86 aa)
	APZ42_034075	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family. (779 aa)
	APZ42_026192	Nuclear protein localization protein 4. (622 aa)
	APZ42_024318	Tether containing UBX domain for GLUT4. (435 aa)
	APZ42_022229	Phospholipase A-2-activating protein. (784 aa)
	APZ42_017198	Nuclear valosin-containing protein. (889 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000771	APZ42_012975	A0A164JE78	A0A162RAS4	Ubiquitin fusion degradation protein 1.	Ubiquitin conjugation factor E4 A.	0.903
APZ42_000771	APZ42_017198	A0A164JE78	A0A164ZR26	Ubiquitin fusion degradation protein 1.	Nuclear valosin-containing protein.	0.787
APZ42_000771	APZ42_020232	A0A164JE78	A0A0P5WCT2	Ubiquitin fusion degradation protein 1.	Spermatogenesis-associated protein 5 protein 1.	0.963
APZ42_000771	APZ42_020501	A0A164JE78	A0A0P5Z862	Ubiquitin fusion degradation protein 1.	UBX domain-containing protein 6.	0.601
APZ42_000771	APZ42_021695	A0A164JE78	A0A0P5S8Z6	Ubiquitin fusion degradation protein 1.	Ubiquitin thioesterase OTU1.	0.952
APZ42_000771	APZ42_022229	A0A164JE78	A0A164W5U9	Ubiquitin fusion degradation protein 1.	Phospholipase A-2-activating protein.	0.963
APZ42_000771	APZ42_024318	A0A164JE78	A0A164UME8	Ubiquitin fusion degradation protein 1.	Tether containing UBX domain for GLUT4.	0.493
APZ42_000771	APZ42_025760	A0A164JE78	A0A0P5TN74	Ubiquitin fusion degradation protein 1.	Spermatogenesis-associated 5 protein 1-like protein.	0.963
APZ42_000771	APZ42_026192	A0A164JE78	A0A164SEF1	Ubiquitin fusion degradation protein 1.	Nuclear protein localization protein 4.	0.999
APZ42_000771	APZ42_028072	A0A164JE78	A0A162D7N3	Ubiquitin fusion degradation protein 1.	NSFL1 cofactor p47.	0.958
APZ42_000771	APZ42_032869	A0A164JE78	A0A0P6I4N6	Ubiquitin fusion degradation protein 1.	UBX domain-containing protein 7.	0.999
APZ42_000771	APZ42_034075	A0A164JE78	A0A164KGP3	Ubiquitin fusion degradation protein 1.	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	0.964
APZ42_008911	APZ42_012975	A0A164EBX0	A0A162RAS4	Ubiquitin fusion degradation protein 1.	Ubiquitin conjugation factor E4 A.	0.895
APZ42_008911	APZ42_017198	A0A164EBX0	A0A164ZR26	Ubiquitin fusion degradation protein 1.	Nuclear valosin-containing protein.	0.787
APZ42_008911	APZ42_020232	A0A164EBX0	A0A0P5WCT2	Ubiquitin fusion degradation protein 1.	Spermatogenesis-associated protein 5 protein 1.	0.906
APZ42_008911	APZ42_020501	A0A164EBX0	A0A0P5Z862	Ubiquitin fusion degradation protein 1.	UBX domain-containing protein 6.	0.470
APZ42_008911	APZ42_021695	A0A164EBX0	A0A0P5S8Z6	Ubiquitin fusion degradation protein 1.	Ubiquitin thioesterase OTU1.	0.952
APZ42_008911	APZ42_022229	A0A164EBX0	A0A164W5U9	Ubiquitin fusion degradation protein 1.	Phospholipase A-2-activating protein.	0.957
APZ42_008911	APZ42_024318	A0A164EBX0	A0A164UME8	Ubiquitin fusion degradation protein 1.	Tether containing UBX domain for GLUT4.	0.492
APZ42_008911	APZ42_025760	A0A164EBX0	A0A0P5TN74	Ubiquitin fusion degradation protein 1.	Spermatogenesis-associated 5 protein 1-like protein.	0.906