(17 nodes) MicroRNA (miRNA) biogenesis, and Double-stranded RNA-binding domain network (Daphnia magna)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_027415	Protein argonaute-1; Belongs to the argonaute family. (945 aa)
	EOG090X04U5	Microprocessor complex subunit DGCR8. (646 aa)
	APZ42_008024	Putative Endoribonuclease dcr-1. (135 aa)
	APZ42_005377	PAZ domain-containing protein. (80 aa)
	APZ42_026328	Loquacious. (360 aa)
	APZ42_012837	Protein argonaute-1. (925 aa)
	APZ42_009511	Dicer dsRNA-binding fold domain-containing protein. (310 aa)
	APZ42_009219	Dicer dsRNA-binding fold domain-containing protein. (208 aa)
	APZ42_003565	RING-type domain-containing protein. (148 aa)
	APZ42_002652	Putative Endoribonuclease Dcr-1. (263 aa)
	APZ42_031073	Putative Double-stranded RNA-binding protein Staufen. (542 aa)
	APZ42_025393	Endoribonuclease Dcr-1. (1807 aa)
	APZ42_023360	Simliar to lola-like protein. (129 aa)
	APZ42_020410	Ribonuclease 3. (1155 aa)
	APZ42_019495	Uncharacterized protein. (222 aa)
	APZ42_016910	RRM domain-containing protein. (1633 aa)
	APZ42_016359	Uncharacterized protein. (738 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002652	APZ42_008024	A0A164I4P4	A0A162D172	Putative Endoribonuclease Dcr-1.	Putative Endoribonuclease dcr-1.	0.429
APZ42_002652	APZ42_012837	A0A164I4P4	A0A162RFB0	Putative Endoribonuclease Dcr-1.	Protein argonaute-1.	0.818
APZ42_002652	APZ42_019495	A0A164I4P4	A0A164Y8C2	Putative Endoribonuclease Dcr-1.	Uncharacterized protein.	0.717
APZ42_002652	APZ42_026328	A0A164I4P4	A0A162EDQ7	Putative Endoribonuclease Dcr-1.	Loquacious.	0.867
APZ42_002652	APZ42_027415	A0A164I4P4	A0A0P5DP86	Putative Endoribonuclease Dcr-1.	Protein argonaute-1; Belongs to the argonaute family.	0.818
APZ42_002652	APZ42_031073	A0A164I4P4	A0A164N5G2	Putative Endoribonuclease Dcr-1.	Putative Double-stranded RNA-binding protein Staufen.	0.717
APZ42_002652	EOG090X04U5	A0A164I4P4	A0A0P5MPW5	Putative Endoribonuclease Dcr-1.	Microprocessor complex subunit DGCR8.	0.755
APZ42_003565	APZ42_012837	A0A164HGP5	A0A162RFB0	RING-type domain-containing protein.	Protein argonaute-1.	0.575
APZ42_003565	APZ42_027415	A0A164HGP5	A0A0P5DP86	RING-type domain-containing protein.	Protein argonaute-1; Belongs to the argonaute family.	0.575
APZ42_005377	APZ42_009219	A0A162D565	A0A164E578	PAZ domain-containing protein.	Dicer dsRNA-binding fold domain-containing protein.	0.403
APZ42_005377	APZ42_009511	A0A162D565	A0A164DYT8	PAZ domain-containing protein.	Dicer dsRNA-binding fold domain-containing protein.	0.405
APZ42_005377	APZ42_012837	A0A162D565	A0A162RFB0	PAZ domain-containing protein.	Protein argonaute-1.	0.761
APZ42_005377	APZ42_019495	A0A162D565	A0A164Y8C2	PAZ domain-containing protein.	Uncharacterized protein.	0.717
APZ42_005377	APZ42_026328	A0A162D565	A0A162EDQ7	PAZ domain-containing protein.	Loquacious.	0.717
APZ42_005377	APZ42_027415	A0A162D565	A0A0P5DP86	PAZ domain-containing protein.	Protein argonaute-1; Belongs to the argonaute family.	0.761
APZ42_005377	APZ42_031073	A0A162D565	A0A164N5G2	PAZ domain-containing protein.	Putative Double-stranded RNA-binding protein Staufen.	0.717
APZ42_005377	EOG090X04U5	A0A162D565	A0A0P5MPW5	PAZ domain-containing protein.	Microprocessor complex subunit DGCR8.	0.745
APZ42_008024	APZ42_002652	A0A162D172	A0A164I4P4	Putative Endoribonuclease dcr-1.	Putative Endoribonuclease Dcr-1.	0.429
APZ42_008024	APZ42_012837	A0A162D172	A0A162RFB0	Putative Endoribonuclease dcr-1.	Protein argonaute-1.	0.818
APZ42_008024	APZ42_019495	A0A162D172	A0A164Y8C2	Putative Endoribonuclease dcr-1.	Uncharacterized protein.	0.717