19 items (Daphnia magna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_012470	Lysine-specific demethylase 4A. (1122 aa)
	APZ42_026720	LON peptidase N-terminal domain and RING finger protein. (791 aa)
	APZ42_030575	RING-type domain-containing protein. (460 aa)
	APZ42_031466	Reverse transcriptase domain-containing protein. (422 aa)
	APZ42_025304	E3 ubiquitin-protein ligase HERC2. (4820 aa)
	APZ42_024255	RING-type domain-containing protein. (189 aa)
	APZ42_015559	Putative BRCA1-A complex subunit BRE. (368 aa)
	APZ42_012978	Lys-63-specific deubiquitinase BRCC36. (246 aa)
	APZ42_005834	RING-type domain-containing protein. (348 aa)
	APZ42_002055	Transglut_core2 domain-containing protein. (237 aa)
	APZ42_001363	Putative Lysine-specific demethylase 4B. (324 aa)
	APZ42_034183	Reverse transcriptase domain-containing protein. (366 aa)
	APZ42_033958	Reverse transcriptase domain-containing protein. (483 aa)
	APZ42_030747	RING-type domain-containing protein. (321 aa)
	APZ42_027118	Uncharacterized protein. (698 aa)
	APZ42_027342	Putative F-box only protein. (670 aa)
	APZ42_025601	Uncharacterized protein. (322 aa)
	APZ42_023331	JmjC domain-containing protein. (305 aa)
	APZ42_019114	Uncharacterized protein. (192 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001363	APZ42_005834	A0A164J1C4	A0A164G8D1	Putative Lysine-specific demethylase 4B.	RING-type domain-containing protein.	0.421
APZ42_001363	APZ42_024255	A0A164J1C4	A0A162DGI1	Putative Lysine-specific demethylase 4B.	RING-type domain-containing protein.	0.421
APZ42_001363	APZ42_026720	A0A164J1C4	A0A0P4WQI9	Putative Lysine-specific demethylase 4B.	LON peptidase N-terminal domain and RING finger protein.	0.512
APZ42_001363	APZ42_027118	A0A164J1C4	A0A164RAD0	Putative Lysine-specific demethylase 4B.	Uncharacterized protein.	0.421
APZ42_001363	APZ42_030575	A0A164J1C4	A0A162D2T0	Putative Lysine-specific demethylase 4B.	RING-type domain-containing protein.	0.550
APZ42_001363	APZ42_030747	A0A164J1C4	A0A164NAX7	Putative Lysine-specific demethylase 4B.	RING-type domain-containing protein.	0.421
APZ42_005834	APZ42_001363	A0A164G8D1	A0A164J1C4	RING-type domain-containing protein.	Putative Lysine-specific demethylase 4B.	0.421
APZ42_005834	APZ42_012470	A0A164G8D1	A0A0N7ZFG0	RING-type domain-containing protein.	Lysine-specific demethylase 4A.	0.535
APZ42_005834	APZ42_012978	A0A164G8D1	A0A162RAI6	RING-type domain-containing protein.	Lys-63-specific deubiquitinase BRCC36.	0.595
APZ42_005834	APZ42_015559	A0A164G8D1	A0A162NUZ3	RING-type domain-containing protein.	Putative BRCA1-A complex subunit BRE.	0.580
APZ42_005834	APZ42_019114	A0A164G8D1	A0A164YKD9	RING-type domain-containing protein.	Uncharacterized protein.	0.535
APZ42_005834	APZ42_023331	A0A164G8D1	A0A164V1N2	RING-type domain-containing protein.	JmjC domain-containing protein.	0.421
APZ42_005834	APZ42_025304	A0A164G8D1	A0A162DDE6	RING-type domain-containing protein.	E3 ubiquitin-protein ligase HERC2.	0.782
APZ42_005834	APZ42_026720	A0A164G8D1	A0A0P4WQI9	RING-type domain-containing protein.	LON peptidase N-terminal domain and RING finger protein.	0.583
APZ42_005834	APZ42_030575	A0A164G8D1	A0A162D2T0	RING-type domain-containing protein.	RING-type domain-containing protein.	0.636
APZ42_005834	APZ42_031466	A0A164G8D1	A0A162DBG1	RING-type domain-containing protein.	Reverse transcriptase domain-containing protein.	0.573
APZ42_005834	APZ42_033958	A0A164G8D1	A0A164KKB5	RING-type domain-containing protein.	Reverse transcriptase domain-containing protein.	0.644
APZ42_005834	APZ42_034183	A0A164G8D1	A0A164KDQ7	RING-type domain-containing protein.	Reverse transcriptase domain-containing protein.	0.530
APZ42_012470	APZ42_005834	A0A0N7ZFG0	A0A164G8D1	Lysine-specific demethylase 4A.	RING-type domain-containing protein.	0.535
APZ42_012470	APZ42_024255	A0A0N7ZFG0	A0A162DGI1	Lysine-specific demethylase 4A.	RING-type domain-containing protein.	0.535