(6 nodes) Hsp20/alpha crystallin family, and PABC (PABP) domain network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_024080	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family. (166 aa)
	APZ42_024085	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family. (170 aa)
	APZ42_015735	HEAT shock protein beta-1; Belongs to the small heat shock protein (HSP20) family. (222 aa)
	APZ42_014111	E3 ubiquitin-protein ligase hyd. (2906 aa)
	APZ42_019087	Heat shock hsp16-1-like protein; Belongs to the small heat shock protein (HSP20) family. (187 aa)
	APZ42_018987	Polyadenylate-binding protein-interacting protein. (423 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_014111	APZ42_018987	A0A162Q010	A0A164YZC4	E3 ubiquitin-protein ligase hyd.	Polyadenylate-binding protein-interacting protein.	0.632
APZ42_015735	APZ42_018987	A0A162N9S9	A0A164YZC4	HEAT shock protein beta-1; Belongs to the small heat shock protein (HSP20) family.	Polyadenylate-binding protein-interacting protein.	0.566
APZ42_015735	APZ42_019087	A0A162N9S9	A0A164YMZ7	HEAT shock protein beta-1; Belongs to the small heat shock protein (HSP20) family.	Heat shock hsp16-1-like protein; Belongs to the small heat shock protein (HSP20) family.	0.733
APZ42_015735	APZ42_024080	A0A162N9S9	A0A0N7ZGN9	HEAT shock protein beta-1; Belongs to the small heat shock protein (HSP20) family.	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	0.644
APZ42_015735	APZ42_024085	A0A162N9S9	A0A0P6AHR5	HEAT shock protein beta-1; Belongs to the small heat shock protein (HSP20) family.	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	0.644
APZ42_018987	APZ42_014111	A0A164YZC4	A0A162Q010	Polyadenylate-binding protein-interacting protein.	E3 ubiquitin-protein ligase hyd.	0.632
APZ42_018987	APZ42_015735	A0A164YZC4	A0A162N9S9	Polyadenylate-binding protein-interacting protein.	HEAT shock protein beta-1; Belongs to the small heat shock protein (HSP20) family.	0.566
APZ42_018987	APZ42_024080	A0A164YZC4	A0A0N7ZGN9	Polyadenylate-binding protein-interacting protein.	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	0.594
APZ42_018987	APZ42_024085	A0A164YZC4	A0A0P6AHR5	Polyadenylate-binding protein-interacting protein.	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	0.594
APZ42_019087	APZ42_015735	A0A164YMZ7	A0A162N9S9	Heat shock hsp16-1-like protein; Belongs to the small heat shock protein (HSP20) family.	HEAT shock protein beta-1; Belongs to the small heat shock protein (HSP20) family.	0.733
APZ42_019087	APZ42_024080	A0A164YMZ7	A0A0N7ZGN9	Heat shock hsp16-1-like protein; Belongs to the small heat shock protein (HSP20) family.	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	0.733
APZ42_019087	APZ42_024085	A0A164YMZ7	A0A0P6AHR5	Heat shock hsp16-1-like protein; Belongs to the small heat shock protein (HSP20) family.	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	0.733
APZ42_024080	APZ42_015735	A0A0N7ZGN9	A0A162N9S9	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	HEAT shock protein beta-1; Belongs to the small heat shock protein (HSP20) family.	0.644
APZ42_024080	APZ42_018987	A0A0N7ZGN9	A0A164YZC4	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	Polyadenylate-binding protein-interacting protein.	0.594
APZ42_024080	APZ42_019087	A0A0N7ZGN9	A0A164YMZ7	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	Heat shock hsp16-1-like protein; Belongs to the small heat shock protein (HSP20) family.	0.733
APZ42_024085	APZ42_015735	A0A0P6AHR5	A0A162N9S9	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	HEAT shock protein beta-1; Belongs to the small heat shock protein (HSP20) family.	0.644
APZ42_024085	APZ42_018987	A0A0P6AHR5	A0A164YZC4	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	Polyadenylate-binding protein-interacting protein.	0.594
APZ42_024085	APZ42_019087	A0A0P6AHR5	A0A164YMZ7	Lethal2essential for life protein; Belongs to the small heat shock protein (HSP20) family.	Heat shock hsp16-1-like protein; Belongs to the small heat shock protein (HSP20) family.	0.733