(11 nodes) Mixed, incl. Positive regulation of actin cytoskeleton reorganization, and Protein Spire network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_025380	Guanine nucleotide exchange factor VAV2. (546 aa)
	APZ42_008587	Uncharacterized protein. (244 aa)
	APZ42_030183	Uncharacterized protein. (332 aa)
	APZ42_029028	TE: Transposable element Tcb1 Transposase. (348 aa)
	APZ42_026401	Putative Spire protein. (561 aa)
	APZ42_025382	Vav protein. (172 aa)
	APZ42_023248	Spire. (122 aa)
	APZ42_022330	Guanine nucleotide exchange factor VAV3. (805 aa)
	APZ42_020171	Phosphoinositide phospholipase C. (748 aa)
	APZ42_019416	DNA-binding protein K10. (512 aa)
	APZ42_018752	SH2 domain-containing protein. (530 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_008587	APZ42_018752	A0A164EJG8	A0A164YSS0	Uncharacterized protein.	SH2 domain-containing protein.	0.638
APZ42_008587	APZ42_019416	A0A164EJG8	A0A164Y4K2	Uncharacterized protein.	DNA-binding protein K10.	0.625
APZ42_008587	APZ42_020171	A0A164EJG8	A0A164Y277	Uncharacterized protein.	Phosphoinositide phospholipase C.	0.627
APZ42_008587	APZ42_022330	A0A164EJG8	A0A164VER6	Uncharacterized protein.	Guanine nucleotide exchange factor VAV3.	0.640
APZ42_008587	APZ42_025380	A0A164EJG8	A0A0P5CHR3	Uncharacterized protein.	Guanine nucleotide exchange factor VAV2.	0.640
APZ42_008587	APZ42_025382	A0A164EJG8	A0A164T4X1	Uncharacterized protein.	Vav protein.	0.640
APZ42_018752	APZ42_008587	A0A164YSS0	A0A164EJG8	SH2 domain-containing protein.	Uncharacterized protein.	0.638
APZ42_018752	APZ42_020171	A0A164YSS0	A0A164Y277	SH2 domain-containing protein.	Phosphoinositide phospholipase C.	0.840
APZ42_018752	APZ42_022330	A0A164YSS0	A0A164VER6	SH2 domain-containing protein.	Guanine nucleotide exchange factor VAV3.	0.711
APZ42_018752	APZ42_023248	A0A164YSS0	A0A164V3U3	SH2 domain-containing protein.	Spire.	0.656
APZ42_018752	APZ42_025380	A0A164YSS0	A0A0P5CHR3	SH2 domain-containing protein.	Guanine nucleotide exchange factor VAV2.	0.711
APZ42_018752	APZ42_025382	A0A164YSS0	A0A164T4X1	SH2 domain-containing protein.	Vav protein.	0.711
APZ42_018752	APZ42_026401	A0A164YSS0	A0A164S775	SH2 domain-containing protein.	Putative Spire protein.	0.656
APZ42_018752	APZ42_029028	A0A164YSS0	A0A164PZA7	SH2 domain-containing protein.	TE: Transposable element Tcb1 Transposase.	0.656
APZ42_018752	APZ42_030183	A0A164YSS0	A0A164P016	SH2 domain-containing protein.	Uncharacterized protein.	0.656
APZ42_019416	APZ42_008587	A0A164Y4K2	A0A164EJG8	DNA-binding protein K10.	Uncharacterized protein.	0.625
APZ42_019416	APZ42_023248	A0A164Y4K2	A0A164V3U3	DNA-binding protein K10.	Spire.	0.750
APZ42_019416	APZ42_026401	A0A164Y4K2	A0A164S775	DNA-binding protein K10.	Putative Spire protein.	0.750
APZ42_019416	APZ42_029028	A0A164Y4K2	A0A164PZA7	DNA-binding protein K10.	TE: Transposable element Tcb1 Transposase.	0.681
APZ42_019416	APZ42_030183	A0A164Y4K2	A0A164P016	DNA-binding protein K10.	Uncharacterized protein.	0.681