(35 nodes) Transport of the SLBP independent Mature mRNA network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_023834	Nuclear pore complex protein Nup50. (443 aa)
	APZ42_026180	Nucleoporin Nup37. (320 aa)
	APZ42_023172	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (642 aa)
	APZ42_021847	Nuclear pore complex protein Nup54. (580 aa)
	APZ42_034337	Putative Nuclear pore glycoprotein p62. (787 aa)
	APZ42_018130	Putative Nuclear RNA export factor. (332 aa)
	APZ42_021151	Uncharacterized protein. (282 aa)
	APZ42_018104	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (305 aa)
	APZ42_022227	Nuclear pore complex protein Nup98-Nup96. (1843 aa)
	APZ42_023435	Nuclear pore membrane glycoprotein 210. (1876 aa)
	APZ42_015305	Nucleoporin at 44A; Belongs to the WD repeat SEC13 family. (363 aa)
	APZ42_022409	Nuclear pore complex protein Nup133. (1116 aa)
	APZ42_011135	Aladin. (467 aa)
	APZ42_015077	Nuclear pore protein. (825 aa)
	APZ42_022012	mRNA export factor. (333 aa)
	APZ42_000921	Nuclear pore complex protein Nup155. (202 aa)
	APZ42_011136	NTF2-related export protein 1. (137 aa)
	EOG090X07N7	SEC13 protein; Belongs to the WD repeat SEC13 family. (311 aa)
	APZ42_014494	WD_REPEATS_REGION domain-containing protein. (202 aa)
	APZ42_013766	Putative Nuclear pore complex protein Nup98-Nup96. (224 aa)
	APZ42_013510	Nuclear pore complex protein Nup155. (224 aa)
	APZ42_010899	Nucleoporin 98-96kD-like protein. (1655 aa)
	APZ42_007055	Nuclear pore complex protein Nup155. (121 aa)
	APZ42_000930	Nuclear pore complex protein Nup155. (248 aa)
	APZ42_031077	Nuclear pore complex Nup153-like protein. (1496 aa)
	APZ42_030621	Nuclear pore complex protein Nup160. (1379 aa)
	APZ42_029205	Nucleoporin p58/p45. (480 aa)
	APZ42_027333	Nuclear pore complex protein Nup205. (1838 aa)
	APZ42_026668	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (915 aa)
	APZ42_026545	Nuclear pore complex protein Nup155. (588 aa)
	APZ42_026406	Nucleoporin 154kD, isoform A. (338 aa)
	APZ42_019609	Nuclear pore complex protein Nup88. (735 aa)
	APZ42_018133	Nuclear RNA export factor 1. (221 aa)
	APZ42_017958	Nucleoprotein TPR. (2316 aa)
	APZ42_016953	Putative Nucleoporin NDC1. (311 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000921	APZ42_000930	A0A162C8L9	A0A164JAB6	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.578
APZ42_000921	APZ42_007055	A0A162C8L9	A0A164FJF0	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.467
APZ42_000921	APZ42_010899	A0A162C8L9	A0A162T9B4	Nuclear pore complex protein Nup155.	Nucleoporin 98-96kD-like protein.	0.900
APZ42_000921	APZ42_011135	A0A162C8L9	A0A0P5ZEL6	Nuclear pore complex protein Nup155.	Aladin.	0.874
APZ42_000921	APZ42_011136	A0A162C8L9	A0A162D018	Nuclear pore complex protein Nup155.	NTF2-related export protein 1.	0.614
APZ42_000921	APZ42_013766	A0A162C8L9	A0A162QIP0	Nuclear pore complex protein Nup155.	Putative Nuclear pore complex protein Nup98-Nup96.	0.836
APZ42_000921	APZ42_014494	A0A162C8L9	A0A162PTB8	Nuclear pore complex protein Nup155.	WD_REPEATS_REGION domain-containing protein.	0.892
APZ42_000921	APZ42_015077	A0A162C8L9	A0A0P6GRK8	Nuclear pore complex protein Nup155.	Nuclear pore protein.	0.923
APZ42_000921	APZ42_015305	A0A162C8L9	A0A0P5X6F0	Nuclear pore complex protein Nup155.	Nucleoporin at 44A; Belongs to the WD repeat SEC13 family.	0.907
APZ42_000921	APZ42_016953	A0A162C8L9	A0A165A9R2	Nuclear pore complex protein Nup155.	Putative Nucleoporin NDC1.	0.881
APZ42_000921	APZ42_017958	A0A162C8L9	A0A164ZGU0	Nuclear pore complex protein Nup155.	Nucleoprotein TPR.	0.749
APZ42_000921	APZ42_018104	A0A162C8L9	A0A0P5DW53	Nuclear pore complex protein Nup155.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.935
APZ42_000921	APZ42_018130	A0A162C8L9	A0A0P5CQ30	Nuclear pore complex protein Nup155.	Putative Nuclear RNA export factor.	0.652
APZ42_000921	APZ42_018133	A0A162C8L9	A0A164ZCP6	Nuclear pore complex protein Nup155.	Nuclear RNA export factor 1.	0.652
APZ42_000921	APZ42_019609	A0A162C8L9	A0A164YAI6	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup88.	0.875
APZ42_000921	APZ42_021151	A0A162C8L9	A0A0P5D433	Nuclear pore complex protein Nup155.	Uncharacterized protein.	0.805
APZ42_000921	APZ42_021847	A0A162C8L9	A0A0P5BVK0	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup54.	0.911
APZ42_000921	APZ42_022012	A0A162C8L9	A0A162C8J9	Nuclear pore complex protein Nup155.	mRNA export factor.	0.746
APZ42_000921	APZ42_022227	A0A162C8L9	A0A0P5EGA2	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup98-Nup96.	0.836
APZ42_000921	APZ42_022409	A0A162C8L9	A0A0P5YWY4	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup133.	0.915