(11 nodes) Nuclear pore outer ring, and Nuclear pore organization network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_026180	Nucleoporin Nup37. (320 aa)
	APZ42_023172	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (642 aa)
	APZ42_018104	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (305 aa)
	APZ42_015305	Nucleoporin at 44A; Belongs to the WD repeat SEC13 family. (363 aa)
	APZ42_022409	Nuclear pore complex protein Nup133. (1116 aa)
	APZ42_015077	Nuclear pore protein. (825 aa)
	EOG090X07N7	SEC13 protein; Belongs to the WD repeat SEC13 family. (311 aa)
	APZ42_014494	WD_REPEATS_REGION domain-containing protein. (202 aa)
	APZ42_030621	Nuclear pore complex protein Nup160. (1379 aa)
	APZ42_027333	Nuclear pore complex protein Nup205. (1838 aa)
	APZ42_026668	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (915 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_014494	APZ42_015077	A0A162PTB8	A0A0P6GRK8	WD_REPEATS_REGION domain-containing protein.	Nuclear pore protein.	0.999
APZ42_014494	APZ42_015305	A0A162PTB8	A0A0P5X6F0	WD_REPEATS_REGION domain-containing protein.	Nucleoporin at 44A; Belongs to the WD repeat SEC13 family.	0.999
APZ42_014494	APZ42_018104	A0A162PTB8	A0A0P5DW53	WD_REPEATS_REGION domain-containing protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.996
APZ42_014494	APZ42_022409	A0A162PTB8	A0A0P5YWY4	WD_REPEATS_REGION domain-containing protein.	Nuclear pore complex protein Nup133.	0.999
APZ42_014494	APZ42_023172	A0A162PTB8	A0A0N8CSH8	WD_REPEATS_REGION domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
APZ42_014494	APZ42_026180	A0A162PTB8	A0A0N8CH87	WD_REPEATS_REGION domain-containing protein.	Nucleoporin Nup37.	0.999
APZ42_014494	APZ42_026668	A0A162PTB8	A0A164S396	WD_REPEATS_REGION domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
APZ42_014494	APZ42_027333	A0A162PTB8	A0A164RHK2	WD_REPEATS_REGION domain-containing protein.	Nuclear pore complex protein Nup205.	0.995
APZ42_014494	APZ42_030621	A0A162PTB8	A0A164NPS4	WD_REPEATS_REGION domain-containing protein.	Nuclear pore complex protein Nup160.	0.999
APZ42_014494	EOG090X07N7	A0A162PTB8	A0A162DGD4	WD_REPEATS_REGION domain-containing protein.	SEC13 protein; Belongs to the WD repeat SEC13 family.	0.999
APZ42_015077	APZ42_014494	A0A0P6GRK8	A0A162PTB8	Nuclear pore protein.	WD_REPEATS_REGION domain-containing protein.	0.999
APZ42_015077	APZ42_015305	A0A0P6GRK8	A0A0P5X6F0	Nuclear pore protein.	Nucleoporin at 44A; Belongs to the WD repeat SEC13 family.	0.997
APZ42_015077	APZ42_018104	A0A0P6GRK8	A0A0P5DW53	Nuclear pore protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.999
APZ42_015077	APZ42_022409	A0A0P6GRK8	A0A0P5YWY4	Nuclear pore protein.	Nuclear pore complex protein Nup133.	0.994
APZ42_015077	APZ42_023172	A0A0P6GRK8	A0A0N8CSH8	Nuclear pore protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
APZ42_015077	APZ42_026180	A0A0P6GRK8	A0A0N8CH87	Nuclear pore protein.	Nucleoporin Nup37.	0.980
APZ42_015077	APZ42_026668	A0A0P6GRK8	A0A164S396	Nuclear pore protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.996
APZ42_015077	APZ42_027333	A0A0P6GRK8	A0A164RHK2	Nuclear pore protein.	Nuclear pore complex protein Nup205.	0.999
APZ42_015077	APZ42_030621	A0A0P6GRK8	A0A164NPS4	Nuclear pore protein.	Nuclear pore complex protein Nup160.	0.980
APZ42_015077	EOG090X07N7	A0A0P6GRK8	A0A162DGD4	Nuclear pore protein.	SEC13 protein; Belongs to the WD repeat SEC13 family.	0.993