(32 nodes) Mixed, incl. SMN complex, and Microtubule associated protein 1 network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_018957	F-box/WD repeat-containing TBL1XR1-like protein. (373 aa)
	APZ42_033491	Gem-associated protein. (102 aa)
	APZ42_010942	Uncharacterized protein. (290 aa)
	APZ42_031770	Putative Histone-binding protein Caf1. (1071 aa)
	APZ42_027633	Putative ATP-dependent RNA helicase DDX43. (826 aa)
	APZ42_020762	Gem-associated protein 8. (197 aa)
	APZ42_026676	DEAD box ATP-dependent RNA Helicase; Belongs to the DEAD box helicase family. (555 aa)
	APZ42_012990	Putative Prip interacting protein, pimt. (504 aa)
	APZ42_007864	Survival of motor neuron protein-interacting protein 1. (127 aa)
	APZ42_028338	Putative Survival motor neuron protein. (191 aa)
	APZ42_031615	Limkain-B1. (1035 aa)
	APZ42_015597	Serine-threonine kinase receptor-associated protein. (110 aa)
	APZ42_014122	Uncharacterized protein. (810 aa)
	APZ42_014156	Uncharacterized protein. (2453 aa)
	APZ42_012271	Serine-threonine kinase receptor-associated protein. (233 aa)
	APZ42_001969	Survival of motor neuron protein-interacting protein 1. (114 aa)
	APZ42_001511	Notchless protein 1. (96 aa)
	APZ42_000089	Uncharacterized protein. (49 aa)
	APZ42_033770	Putative Coilin/sw. (481 aa)
	APZ42_032775	Methylosome protein 50. (335 aa)
	APZ42_031619	Limkain-B1. (242 aa)
	APZ42_030175	CCHC-type domain-containing protein. (989 aa)
	APZ42_026032	Beat-VII-like protein. (257 aa)
	APZ42_024847	Uncharacterized protein. (701 aa)
	APZ42_024747	Fragile X mental retardation Syndrome-related protein. (637 aa)
	APZ42_024633	Putative Survival of motor neuron protein-interacting protein 1. (139 aa)
	APZ42_023774	Putative Beaten path IIa. (344 aa)
	APZ42_022850	Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. (576 aa)
	APZ42_022207	Ig-like domain-containing protein. (252 aa)
	APZ42_021136	Putative WD repeat-containing protein 18. (1289 aa)
	APZ42_020407	Angio-associated migratory cell protein. (415 aa)
	APZ42_016952	Methylosome subunit pICln. (183 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000089	APZ42_001511	A0A164JXE4	A0A164IXL5	Uncharacterized protein.	Notchless protein 1.	0.459
APZ42_000089	APZ42_012990	A0A164JXE4	A0A0P6GRZ5	Uncharacterized protein.	Putative Prip interacting protein, pimt.	0.452
APZ42_000089	APZ42_014122	A0A164JXE4	A0A162Q0D6	Uncharacterized protein.	Uncharacterized protein.	0.498
APZ42_000089	APZ42_014156	A0A164JXE4	A0A162Q0F2	Uncharacterized protein.	Uncharacterized protein.	0.498
APZ42_000089	APZ42_020762	A0A164JXE4	A0A0P5XRG7	Uncharacterized protein.	Gem-associated protein 8.	0.598
APZ42_000089	APZ42_024847	A0A164JXE4	A0A164TME0	Uncharacterized protein.	Uncharacterized protein.	0.501
APZ42_000089	APZ42_026676	A0A164JXE4	A0A0P5YR56	Uncharacterized protein.	DEAD box ATP-dependent RNA Helicase; Belongs to the DEAD box helicase family.	0.650
APZ42_000089	APZ42_028338	A0A164JXE4	A0A162D7F4	Uncharacterized protein.	Putative Survival motor neuron protein.	0.724
APZ42_000089	APZ42_033491	A0A164JXE4	A0A0P5LZC9	Uncharacterized protein.	Gem-associated protein.	0.537
APZ42_001511	APZ42_000089	A0A164IXL5	A0A164JXE4	Notchless protein 1.	Uncharacterized protein.	0.459
APZ42_001511	APZ42_001969	A0A164IXL5	A0A164ILU2	Notchless protein 1.	Survival of motor neuron protein-interacting protein 1.	0.459
APZ42_001511	APZ42_007864	A0A164IXL5	A0A162BTR4	Notchless protein 1.	Survival of motor neuron protein-interacting protein 1.	0.459
APZ42_001511	APZ42_010942	A0A164IXL5	A0A0P5SIK7	Notchless protein 1.	Uncharacterized protein.	0.459
APZ42_001511	APZ42_018957	A0A164IXL5	A0A0P5CYP5	Notchless protein 1.	F-box/WD repeat-containing TBL1XR1-like protein.	0.556
APZ42_001511	APZ42_022207	A0A164IXL5	A0A164W3Y0	Notchless protein 1.	Ig-like domain-containing protein.	0.459
APZ42_001511	APZ42_023774	A0A164IXL5	A0A164U492	Notchless protein 1.	Putative Beaten path IIa.	0.459
APZ42_001511	APZ42_024633	A0A164IXL5	A0A164TVV4	Notchless protein 1.	Putative Survival of motor neuron protein-interacting protein 1.	0.459
APZ42_001511	APZ42_026032	A0A164IXL5	A0A164SJA3	Notchless protein 1.	Beat-VII-like protein.	0.459
APZ42_001511	APZ42_031615	A0A164IXL5	A0A162DB72	Notchless protein 1.	Limkain-B1.	0.459
APZ42_001511	APZ42_031619	A0A164IXL5	A0A164MQT4	Notchless protein 1.	Limkain-B1.	0.459