(11 nodes) Phosphatidylserine binding network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_028675	Eater. (1100 aa)
	APZ42_022061	Synaptotagmin-11. (517 aa)
	APZ42_027555	Sorting nexin-25. (889 aa)
	APZ42_012853	Putative Synaptotagmin 7. (659 aa)
	APZ42_011307	Synaptotagmin-15. (464 aa)
	APZ42_032515	Synaptotagmin 1 protein, variant 2. (445 aa)
	APZ42_029342	VASt domain-containing protein. (902 aa)
	APZ42_020417	Kinase c and casein kinase substrate in neurons protein. (534 aa)
	APZ42_018682	C2 domain-containing protein. (244 aa)
	APZ42_032784	Putative Synaptotagmin beta. (897 aa)
	APZ42_013700	Synaptotagmin-17. (549 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_018682	APZ42_032515	A0A162CGA4	A0A164LM42	C2 domain-containing protein.	Synaptotagmin 1 protein, variant 2.	0.849
APZ42_018682	APZ42_032784	A0A162CGA4	A0A162D961	C2 domain-containing protein.	Putative Synaptotagmin beta.	0.610
APZ42_022061	APZ42_032515	A0A0P5E9L6	A0A164LM42	Synaptotagmin-11.	Synaptotagmin 1 protein, variant 2.	0.849
APZ42_022061	APZ42_032784	A0A0P5E9L6	A0A162D961	Synaptotagmin-11.	Putative Synaptotagmin beta.	0.610
APZ42_032515	APZ42_018682	A0A164LM42	A0A162CGA4	Synaptotagmin 1 protein, variant 2.	C2 domain-containing protein.	0.849
APZ42_032515	APZ42_022061	A0A164LM42	A0A0P5E9L6	Synaptotagmin 1 protein, variant 2.	Synaptotagmin-11.	0.849
APZ42_032515	APZ42_032784	A0A164LM42	A0A162D961	Synaptotagmin 1 protein, variant 2.	Putative Synaptotagmin beta.	0.674
APZ42_032784	APZ42_018682	A0A162D961	A0A162CGA4	Putative Synaptotagmin beta.	C2 domain-containing protein.	0.610
APZ42_032784	APZ42_022061	A0A162D961	A0A0P5E9L6	Putative Synaptotagmin beta.	Synaptotagmin-11.	0.610
APZ42_032784	APZ42_032515	A0A162D961	A0A164LM42	Putative Synaptotagmin beta.	Synaptotagmin 1 protein, variant 2.	0.674