(39 nodes) Neuromuscular synaptic transmission network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_012237	WD40 repeat-containing protein SMU1. (513 aa)
	APZ42_018033	Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family. (3241 aa)
	APZ42_028622	Putative Telomerase-binding protein EST1A. (1755 aa)
	APZ42_011972	Fuseless. (402 aa)
	APZ42_017992	Secretory carrier-associated membrane protein. (346 aa)
	APZ42_010846	Spectrin beta chain; Belongs to the spectrin family. (2436 aa)
	APZ42_027200	Putative Neuropilin and tolloid protein 2. (636 aa)
	APZ42_015820	Syntaxin-18. (316 aa)
	APZ42_032066	FCH and double SH3 domains protein. (981 aa)
	APZ42_033020	Alpha-soluble NSF attachment protein. (293 aa)
	APZ42_031339	Spectrin alpha chain, non-erythrocytic. (2414 aa)
	APZ42_016296	Complement component 1 Q subcomponent-binding protein, mitochondrial. (269 aa)
	APZ42_034344	TBC1 domain family member 24. (620 aa)
	APZ42_019570	Teneurin-1. (2573 aa)
	APZ42_019810	Peripheral-type benzodiazepine receptor-associated 1-like protein. (1631 aa)
	APZ42_028338	Putative Survival motor neuron protein. (191 aa)
	APZ42_032520	Uncharacterized protein. (1125 aa)
	APZ42_025904	Complexin. (74 aa)
	APZ42_015993	Beag. (547 aa)
	APZ42_013595	Putative ELKS/Rab6-interacting/CAST family member 1. (1720 aa)
	APZ42_013106	Putative Serine/threonine-protein kinase SMG1. (405 aa)
	APZ42_011037	Regulator of nonsense transcripts 2. (1060 aa)
	APZ42_010892	Putative Spectrin beta chain. (77 aa)
	APZ42_002051	Neurexin-2-alpha. (256 aa)
	APZ42_033094	Spectrin beta chain-like protein. (465 aa)
	APZ42_033023	Putative TGF-beta ligand glass bottom boat protein. (459 aa)
	APZ42_032688	Teneurin-3. (3344 aa)
	APZ42_028167	Regulating synaptic membrane exocytosis 2-like protein. (1032 aa)
	APZ42_026816	Peripheral plasma membrane protein CASK. (318 aa)
	APZ42_024354	Putative ELKS/RAB6-interacting/CAST family member. (667 aa)
	APZ42_023721	Putative Slowpoke-binding protein. (331 aa)
	APZ42_022228	Vesicle-fusing ATPase. (743 aa)
	APZ42_020512	F-box/SPRY domain-containing protein 1. (251 aa)
	APZ42_019823	Putative Peripheral-type benzodiazepine receptor-associated protein. (681 aa)
	APZ42_019532	Biogenesis of lysosome-related organelles complex 1 subunit 1. (123 aa)
	APZ42_018100	Uncharacterized protein. (1237 aa)
	APZ42_017996	Secretory carrier-associated membrane protein. (323 aa)
	APZ42_017726	Neurexin-2-alpha. (1470 aa)
	APZ42_017521	Rho GTPase-activating protein 92B. (867 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002051	APZ42_017726	A0A164IJN5	A0A164ZLW9	Neurexin-2-alpha.	Neurexin-2-alpha.	0.899
APZ42_002051	APZ42_026816	A0A164IJN5	A0A164RYF7	Neurexin-2-alpha.	Peripheral plasma membrane protein CASK.	0.991
APZ42_010846	APZ42_026816	A0A0P5C5W3	A0A164RYF7	Spectrin beta chain; Belongs to the spectrin family.	Peripheral plasma membrane protein CASK.	0.500
APZ42_010846	APZ42_031339	A0A0P5C5W3	A0A0P5ZGU3	Spectrin beta chain; Belongs to the spectrin family.	Spectrin alpha chain, non-erythrocytic.	0.897
APZ42_010846	APZ42_033094	A0A0P5C5W3	A0A164LDS2	Spectrin beta chain; Belongs to the spectrin family.	Spectrin beta chain-like protein.	0.904
APZ42_010892	APZ42_026816	A0A162T907	A0A164RYF7	Putative Spectrin beta chain.	Peripheral plasma membrane protein CASK.	0.500
APZ42_010892	APZ42_031339	A0A162T907	A0A0P5ZGU3	Putative Spectrin beta chain.	Spectrin alpha chain, non-erythrocytic.	0.897
APZ42_010892	APZ42_033094	A0A162T907	A0A164LDS2	Putative Spectrin beta chain.	Spectrin beta chain-like protein.	0.897
APZ42_011037	APZ42_013106	A0A162T4L9	A0A162R5Y6	Regulator of nonsense transcripts 2.	Putative Serine/threonine-protein kinase SMG1.	0.957
APZ42_011037	APZ42_018033	A0A162T4L9	A0A0P5A4R1	Regulator of nonsense transcripts 2.	Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.	0.957
APZ42_011037	APZ42_028622	A0A162T4L9	A0A0P5ANQ7	Regulator of nonsense transcripts 2.	Putative Telomerase-binding protein EST1A.	0.813
APZ42_012237	APZ42_015993	A0A0N8EDQ2	A0A162NIL7	WD40 repeat-containing protein SMU1.	Beag.	0.998
APZ42_013106	APZ42_011037	A0A162R5Y6	A0A162T4L9	Putative Serine/threonine-protein kinase SMG1.	Regulator of nonsense transcripts 2.	0.957
APZ42_013106	APZ42_028622	A0A162R5Y6	A0A0P5ANQ7	Putative Serine/threonine-protein kinase SMG1.	Putative Telomerase-binding protein EST1A.	0.840
APZ42_013595	APZ42_019810	A0A162QMP1	A0A162CM76	Putative ELKS/Rab6-interacting/CAST family member 1.	Peripheral-type benzodiazepine receptor-associated 1-like protein.	0.420
APZ42_013595	APZ42_019823	A0A162QMP1	A0A164XQU8	Putative ELKS/Rab6-interacting/CAST family member 1.	Putative Peripheral-type benzodiazepine receptor-associated protein.	0.420
APZ42_013595	APZ42_024354	A0A162QMP1	A0A164U3M1	Putative ELKS/Rab6-interacting/CAST family member 1.	Putative ELKS/RAB6-interacting/CAST family member.	0.943
APZ42_013595	APZ42_028167	A0A162QMP1	A0A164QJQ3	Putative ELKS/Rab6-interacting/CAST family member 1.	Regulating synaptic membrane exocytosis 2-like protein.	0.837
APZ42_015820	APZ42_022228	A0A0P5TAN6	A0A164W5F2	Syntaxin-18.	Vesicle-fusing ATPase.	0.859
APZ42_015820	APZ42_033020	A0A0P5TAN6	A0A0P5Y9W5	Syntaxin-18.	Alpha-soluble NSF attachment protein.	0.939