(5 nodes) Maintenance of DNA methylation network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_013659	Putative Lymphoid-specific Helicase. (848 aa)
	APZ42_026551	YDG domain-containing protein. (350 aa)
	APZ42_022979	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1390 aa)
	APZ42_012381	E3 ubiquitin-protein ligase UHRF1. (1104 aa)
	APZ42_026932	YDG domain-containing protein. (517 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_012381	APZ42_022979	A0A162RSB3	A0A0P5ZVV5	E3 ubiquitin-protein ligase UHRF1.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.979
APZ42_013659	APZ42_022979	A0A0P5A5F8	A0A0P5ZVV5	Putative Lymphoid-specific Helicase.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.433
APZ42_022979	APZ42_012381	A0A0P5ZVV5	A0A162RSB3	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	E3 ubiquitin-protein ligase UHRF1.	0.979
APZ42_022979	APZ42_013659	A0A0P5ZVV5	A0A0P5A5F8	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Putative Lymphoid-specific Helicase.	0.433
APZ42_022979	APZ42_026551	A0A0P5ZVV5	A0A0P5V7W6	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	YDG domain-containing protein.	0.902
APZ42_022979	APZ42_026932	A0A0P5ZVV5	A0A164RTH7	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	YDG domain-containing protein.	0.902
APZ42_026551	APZ42_022979	A0A0P5V7W6	A0A0P5ZVV5	YDG domain-containing protein.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.902
APZ42_026932	APZ42_022979	A0A164RTH7	A0A0P5ZVV5	YDG domain-containing protein.	DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.902