STRINGSTRING
APZ42_029399 APZ42_029399 APZ42_030800 APZ42_030800 APZ42_012558 APZ42_012558 APZ42_019439 APZ42_019439 APZ42_023975 APZ42_023975 APZ42_028634 APZ42_028634 EOG090X01A3 EOG090X01A3 APZ42_028635 APZ42_028635
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APZ42_029399Synaptic vesicle membrane protein VAT-1. (345 aa)
APZ42_030800Metalloendopeptidase OMA1, mitochondrial. (417 aa)
APZ42_012558FAM73B protein. (410 aa)
APZ42_019439Optic atrophy 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (978 aa)
APZ42_023975E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. (409 aa)
APZ42_028634AarF domain-containing protein kinase 1. (508 aa)
EOG090X01A3Transmembrane GTPase Marf; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (760 aa)
APZ42_028635AarF domain-containing protein kinase 1. (509 aa)
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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