(12 nodes) Cholesterol binding network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_016927	Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (226 aa)
	APZ42_016912	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (193 aa)
	APZ42_002982	Oxysterol-binding protein. (232 aa)
	APZ42_029342	VASt domain-containing protein. (902 aa)
	APZ42_023212	Niemann-Pick C1 protein. (990 aa)
	APZ42_019959	Oxysterol-binding protein. (600 aa)
	APZ42_017689	Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (200 aa)
	APZ42_029206	Oxysterol-binding protein; Belongs to the OSBP family. (880 aa)
	APZ42_018748	StAR-related lipid transfer protein 5. (474 aa)
	APZ42_019458	Putative Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (190 aa)
	APZ42_026829	Lipocln_cytosolic_FA-bd_dom domain-containing protein. (128 aa)
	APZ42_013800	Erlin-1. (329 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002982	APZ42_019959	A0A164HWZ9	A0A164XVI1	Oxysterol-binding protein.	Oxysterol-binding protein.	0.922
APZ42_018748	APZ42_023212	A0A0P5LQT0	A0A164V4P3	StAR-related lipid transfer protein 5.	Niemann-Pick C1 protein.	0.408
APZ42_019959	APZ42_002982	A0A164XVI1	A0A164HWZ9	Oxysterol-binding protein.	Oxysterol-binding protein.	0.922
APZ42_023212	APZ42_018748	A0A164V4P3	A0A0P5LQT0	Niemann-Pick C1 protein.	StAR-related lipid transfer protein 5.	0.408
APZ42_023212	APZ42_029206	A0A164V4P3	A0A0P5BL02	Niemann-Pick C1 protein.	Oxysterol-binding protein; Belongs to the OSBP family.	0.721
APZ42_029206	APZ42_023212	A0A0P5BL02	A0A164V4P3	Oxysterol-binding protein; Belongs to the OSBP family.	Niemann-Pick C1 protein.	0.721