(34 nodes) Viral process network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_029718	Natural resistance-associated macrophage protein 2. (592 aa)
	APZ42_024781	Ras-related protein Rab-14. (215 aa)
	APZ42_024197	Ras-related protein Rab-5C. (227 aa)
	APZ42_022951	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (207 aa)
	APZ42_022686	Dynamin. (531 aa)
	APZ42_022230	Exocyst complex component 4. (1080 aa)
	APZ42_020937	Apoptosis regulatory protein Siva. (177 aa)
	APZ42_019817	Eukaryotic translation initiation factor 2D. (576 aa)
	APZ42_019395	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family. (1087 aa)
	APZ42_018396	Exocyst complex component 5. (714 aa)
	APZ42_016272	Putative Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (523 aa)
	APZ42_032460	Golgi phosphoprotein 3 rotini. (291 aa)
	EOG090X0BB3	Autophagy protein 5; Involved in autophagic vesicle formation. (271 aa)
	APZ42_016674	Ras-related protein Rab-26. (288 aa)
	APZ42_019580	Transcription elongation factor B Polypeptide 1; Belongs to the SKP1 family. (114 aa)
	APZ42_019802	Guanine nucleotide-binding protein subunit beta protein. (319 aa)
	APZ42_020191	Uncharacterized protein. (233 aa)
	APZ42_028570	Vacuolar protein sorting-associated protein 4B; Belongs to the AAA ATPase family. (443 aa)
	APZ42_013276	Multivesicular body subunit 12B. (297 aa)
	APZ42_014248	Ras-related protein Rab-35. (201 aa)
	APZ42_020788	AP complex subunit beta. (927 aa)
	APZ42_021444	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (866 aa)
	APZ42_034484	Malvolio protein. (471 aa)
	APZ42_012229	Ras-related protein Rab-11A. (215 aa)
	APZ42_025807	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (183 aa)
	APZ42_015345	Charged multivesicular body protein 4B. (140 aa)
	EOG090X0JP1	Transcription elongation factor B polypeptide 2. (120 aa)
	APZ42_012213	Vasopressin neuropeptide preprohormone-like protein. (150 aa)
	APZ42_011337	Tumor suppressor protein 101. (397 aa)
	APZ42_011511	Ras-related protein Rab-2. (212 aa)
	APZ42_011040	Charged multivesicular body protein 5. (234 aa)
	APZ42_000589	Malvolio protein. (199 aa)
	APZ42_031955	Cullin-2; Belongs to the cullin family. (754 aa)
	APZ42_030693	Autophagy protein 5; Involved in autophagic vesicle formation. (71 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011040	APZ42_011337	A0A162T5J7	A0A162SLZ4	Charged multivesicular body protein 5.	Tumor suppressor protein 101.	0.689
APZ42_011040	APZ42_013276	A0A162T5J7	A0A0P5ZI67	Charged multivesicular body protein 5.	Multivesicular body subunit 12B.	0.420
APZ42_011040	APZ42_015345	A0A162T5J7	A0A162PEU0	Charged multivesicular body protein 5.	Charged multivesicular body protein 4B.	0.995
APZ42_011040	APZ42_020191	A0A162T5J7	A0A0P5XJ49	Charged multivesicular body protein 5.	Uncharacterized protein.	0.986
APZ42_011040	APZ42_028570	A0A162T5J7	A0A0P5YC79	Charged multivesicular body protein 5.	Vacuolar protein sorting-associated protein 4B; Belongs to the AAA ATPase family.	0.986
APZ42_011337	APZ42_011040	A0A162SLZ4	A0A162T5J7	Tumor suppressor protein 101.	Charged multivesicular body protein 5.	0.689
APZ42_011337	APZ42_012229	A0A162SLZ4	A0A162CY40	Tumor suppressor protein 101.	Ras-related protein Rab-11A.	0.419
APZ42_011337	APZ42_013276	A0A162SLZ4	A0A0P5ZI67	Tumor suppressor protein 101.	Multivesicular body subunit 12B.	0.992
APZ42_011337	APZ42_014248	A0A162SLZ4	A0A0P5ZIH4	Tumor suppressor protein 101.	Ras-related protein Rab-35.	0.556
APZ42_011337	APZ42_015345	A0A162SLZ4	A0A162PEU0	Tumor suppressor protein 101.	Charged multivesicular body protein 4B.	0.878
APZ42_011337	APZ42_020191	A0A162SLZ4	A0A0P5XJ49	Tumor suppressor protein 101.	Uncharacterized protein.	0.632
APZ42_011337	APZ42_024197	A0A162SLZ4	A0A164UJQ4	Tumor suppressor protein 101.	Ras-related protein Rab-5C.	0.579
APZ42_011337	APZ42_028570	A0A162SLZ4	A0A0P5YC79	Tumor suppressor protein 101.	Vacuolar protein sorting-associated protein 4B; Belongs to the AAA ATPase family.	0.693
APZ42_011337	EOG090X0JP1	A0A162SLZ4	A0A162RIY9	Tumor suppressor protein 101.	Transcription elongation factor B polypeptide 2.	0.567
APZ42_011511	APZ42_012229	A0A162SRZ7	A0A162CY40	Ras-related protein Rab-2.	Ras-related protein Rab-11A.	0.652
APZ42_011511	APZ42_014248	A0A162SRZ7	A0A0P5ZIH4	Ras-related protein Rab-2.	Ras-related protein Rab-35.	0.561
APZ42_011511	APZ42_016674	A0A162SRZ7	A0A0P5K7E3	Ras-related protein Rab-2.	Ras-related protein Rab-26.	0.528
APZ42_011511	APZ42_018396	A0A162SRZ7	A0A164Z687	Ras-related protein Rab-2.	Exocyst complex component 5.	0.604
APZ42_011511	APZ42_020788	A0A162SRZ7	A0A0P6DXK2	Ras-related protein Rab-2.	AP complex subunit beta.	0.640
APZ42_011511	APZ42_022230	A0A162SRZ7	A0A164W5M8	Ras-related protein Rab-2.	Exocyst complex component 4.	0.620