(9 nodes) Protein-hormone receptor activity network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_030785	Progestin and adipoQ receptor family member 4. (383 aa)
	APZ42_029501	Adiponectin receptor protein. (464 aa)
	APZ42_031963	Putative Fsh-Tsh receptor. (350 aa)
	APZ42_001659	Tyrosine-protein kinase receptor. (151 aa)
	APZ42_014551	Relaxin receptor 1. (1633 aa)
	APZ42_015829	Tyrosine-protein kinase receptor. (1304 aa)
	APZ42_015832	Tyrosine-protein kinase receptor. (1310 aa)
	APZ42_024666	Lutropin-choriogonadotropic hormone receptor. (565 aa)
	APZ42_025713	Putative G-protein coupled receptor 174. (439 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_014551	APZ42_024666	A0A162PR01	A0A0P6A5I8	Relaxin receptor 1.	Lutropin-choriogonadotropic hormone receptor.	0.419
APZ42_024666	APZ42_014551	A0A0P6A5I8	A0A162PR01	Lutropin-choriogonadotropic hormone receptor.	Relaxin receptor 1.	0.419
APZ42_024666	APZ42_025713	A0A0P6A5I8	A0A164SSR0	Lutropin-choriogonadotropic hormone receptor.	Putative G-protein coupled receptor 174.	0.410
APZ42_025713	APZ42_024666	A0A164SSR0	A0A0P6A5I8	Putative G-protein coupled receptor 174.	Lutropin-choriogonadotropic hormone receptor.	0.410
APZ42_025713	APZ42_031963	A0A164SSR0	A0A164MFB4	Putative G-protein coupled receptor 174.	Putative Fsh-Tsh receptor.	0.410
APZ42_031963	APZ42_025713	A0A164MFB4	A0A164SSR0	Putative Fsh-Tsh receptor.	Putative G-protein coupled receptor 174.	0.410