(95 nodes) Peptidase activator activity network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_034297	Proteasomal ubiquitin receptor ADRM1. (1146 aa)
	APZ42_008788	GMP synthase. (124 aa)
	APZ42_011133	GMP synthase. (61 aa)
	APZ42_011134	Putative GMP synthase. (196 aa)
	APZ42_011775	Putative GMP synthase. (282 aa)
	APZ42_011310	Putative GMP synthase. (112 aa)
	APZ42_012255	Putative GMP synthase. (362 aa)
	APZ42_012252	Putative GMP synthase. (310 aa)
	APZ42_012136	Proteasome activator complex subunit. (1077 aa)
	APZ42_012142	Proteasome activator complex subunit. (674 aa)
	APZ42_012066	Putative GMP synthase. (183 aa)
	APZ42_012537	Putative GMP synthase. (161 aa)
	APZ42_012895	Putative GMP synthase. (220 aa)
	APZ42_014689	Putative GMP synthase. (101 aa)
	APZ42_014805	GMP synthase. (90 aa)
	APZ42_014806	Putative GMP synthase. (162 aa)
	APZ42_015477	GMP synthase-like protein. (183 aa)
	APZ42_014942	Uncharacterized protein. (368 aa)
	APZ42_015568	Putative GMP synthase. (106 aa)
	APZ42_015632	Putative GMP synthase. (91 aa)
	APZ42_015819	GMP synthase. (129 aa)
	APZ42_030741	Putative GMP synthase. (313 aa)
	APZ42_025920	GMP synthase. (244 aa)
	APZ42_029684	Putative GMP synthase. (184 aa)
	APZ42_007393	Putative GMP synthase. (63 aa)
	APZ42_008149	GMP synthase. (91 aa)
	APZ42_011527	Putative GMP synthase. (246 aa)
	APZ42_004882	GMP synthase. (73 aa)
	APZ42_018558	Uncharacterized protein. (317 aa)
	APZ42_018719	Putative GMP synthase. (106 aa)
	APZ42_020192	Putative GMP synthase. (305 aa)
	APZ42_005529	GMP synthase. (73 aa)
	APZ42_016000	Putative Inactive caspase-12; Belongs to the peptidase C14A family. (513 aa)
	APZ42_018052	GMP synthase (Glutamine-hydrolyzing)-like protein. (200 aa)
	APZ42_011553	Polycomb group protein ASXL3. (1305 aa)
	APZ42_012131	GMP synthase (Glutamine-hydrolyzing). (686 aa)
	APZ42_019025	Gamma-secretase subunit PEN-2. (101 aa)
	APZ42_030562	Proteasome activator complex subunit 3. (242 aa)
	APZ42_021294	Putative GMP synthase. (123 aa)
	APZ42_018967	GMP synthase (Glutamine-hydrolyzing)-like protein. (144 aa)
	APZ42_030307	Putative GMP synthase. (198 aa)
	APZ42_030277	Putative GMP synthase. (290 aa)
	APZ42_029782	GMP synthase. (209 aa)
	APZ42_029749	Putative GMP synthase. (146 aa)
	APZ42_028712	GMP synthase. (290 aa)
	APZ42_027823	GMP synthase. (70 aa)
	APZ42_027690	GMP synthase. (154 aa)
	APZ42_027216	Putative GMP synthase. (128 aa)
	APZ42_027392	GMP synthase-like protein. (152 aa)
	APZ42_026418	GMP synthase. (50 aa)
	APZ42_025500	Putative GMP synthase. (110 aa)
	APZ42_025145	Putative GMP synthase. (203 aa)
	APZ42_024698	Putative GMP synthase. (147 aa)
	APZ42_023562	Putative GMP synthase. (102 aa)
	APZ42_023595	Putative GMP synthase. (316 aa)
	APZ42_023467	Putative GMP synthase. (137 aa)
	APZ42_023401	Putative GMP synthase. (230 aa)
	APZ42_023287	Putative GMP synthase. (198 aa)
	APZ42_023245	GMP synthase. (69 aa)
	APZ42_022951	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (207 aa)
	APZ42_022833	GMP synthase. (92 aa)
	APZ42_020999	Putative GMP synthase. (274 aa)
	APZ42_020671	Putative GMP synthase. (187 aa)
	APZ42_020724	Putative GMP synthase. (104 aa)
	APZ42_020240	GMP synthase. (66 aa)
	APZ42_019034	Putative Burgundy. (457 aa)
	APZ42_018679	GMP synthase. (337 aa)
	APZ42_018722	GMP synthase. (79 aa)
	APZ42_018852	Putative GMP synthase. (407 aa)
	APZ42_018854	GMP synthase-like protein. (205 aa)
	APZ42_018933	Putative GMP synthase. (362 aa)
	APZ42_017946	Putative GMP synthase. (139 aa)
	APZ42_018056	GMP synthase. (48 aa)
	APZ42_017581	GMP synthase. (121 aa)
	APZ42_017103	GMP synthase. (165 aa)
	APZ42_017087	Putative GMP synthase. (302 aa)
	APZ42_016518	GMP synthase-like protein. (235 aa)
	APZ42_032220	Putative GMP synthase. (236 aa)
	APZ42_032386	GMP synthase. (78 aa)
	APZ42_032710	Putative GMP synthase. (261 aa)
	APZ42_034101	Putative GMP synthase. (86 aa)
	APZ42_000607	Putative GMP synthase. (157 aa)
	APZ42_000869	Putative GMP synthase. (91 aa)
	APZ42_030637	Putative GMP synthase. (302 aa)
	APZ42_001064	GMP synthase. (99 aa)
	APZ42_001239	GMP synthase. (119 aa)
	APZ42_001649	GMP synthase. (167 aa)
	APZ42_001833	Putative GMP synthase. (267 aa)
	APZ42_002978	Putative GMP synthase. (91 aa)
	APZ42_003444	GMP synthase. (115 aa)
	APZ42_004520	GMP synthase. (64 aa)
	APZ42_005142	GMP synthase. (91 aa)
	APZ42_006468	Putative GMP synthase. (313 aa)
	APZ42_007513	Putative GMP synthase. (101 aa)
	APZ42_008200	GMP synthase. (68 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001064	APZ42_018933	A0A164J730	A0A164YY04	GMP synthase.	Putative GMP synthase.	0.487
APZ42_001833	APZ42_015632	A0A164IPX8	A0A162NRN6	Putative GMP synthase.	Putative GMP synthase.	0.463
APZ42_001833	APZ42_030637	A0A164IPX8	A0A164NPP8	Putative GMP synthase.	Putative GMP synthase.	0.859
APZ42_001833	APZ42_032386	A0A164IPX8	A0A164M1S3	Putative GMP synthase.	GMP synthase.	0.463
APZ42_007393	APZ42_011310	A0A162D219	A0A162SJW3	Putative GMP synthase.	Putative GMP synthase.	0.523
APZ42_007393	APZ42_011527	A0A162D219	A0A162CZC1	Putative GMP synthase.	Putative GMP synthase.	0.491
APZ42_007393	APZ42_015632	A0A162D219	A0A162NRN6	Putative GMP synthase.	Putative GMP synthase.	0.520
APZ42_007393	APZ42_017103	A0A162D219	A0A165A0X4	Putative GMP synthase.	GMP synthase.	0.422
APZ42_007393	APZ42_018719	A0A162D219	A0A162CPS2	Putative GMP synthase.	Putative GMP synthase.	0.513
APZ42_008200	APZ42_011527	A0A164ET56	A0A162CZC1	GMP synthase.	Putative GMP synthase.	0.437
APZ42_008200	APZ42_015632	A0A164ET56	A0A162NRN6	GMP synthase.	Putative GMP synthase.	0.460
APZ42_008200	APZ42_018679	A0A164ET56	A0A164YR76	GMP synthase.	GMP synthase.	0.471
APZ42_008200	APZ42_032386	A0A164ET56	A0A164M1S3	GMP synthase.	GMP synthase.	0.457
APZ42_011133	APZ42_015632	A0A162T347	A0A162NRN6	GMP synthase.	Putative GMP synthase.	0.426
APZ42_011133	APZ42_032386	A0A162T347	A0A164M1S3	GMP synthase.	GMP synthase.	0.417
APZ42_011310	APZ42_007393	A0A162SJW3	A0A162D219	Putative GMP synthase.	Putative GMP synthase.	0.523
APZ42_011527	APZ42_007393	A0A162CZC1	A0A162D219	Putative GMP synthase.	Putative GMP synthase.	0.491
APZ42_011527	APZ42_008200	A0A162CZC1	A0A164ET56	Putative GMP synthase.	GMP synthase.	0.437
APZ42_011527	APZ42_018722	A0A162CZC1	A0A164YRY9	Putative GMP synthase.	GMP synthase.	0.428
APZ42_011527	APZ42_021294	A0A162CZC1	A0A0P5DSF8	Putative GMP synthase.	Putative GMP synthase.	0.456