(43 nodes) Oxidoreductase activity, acting on the CH-CH group of donors network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_012481	3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)). (275 aa)
	APZ42_017798	Long-chain specific acyl-CoA dehydrogenase, mitochondrial. (450 aa)
	APZ42_031794	Delta(24)-sterol reductase. (537 aa)
	APZ42_023089	Delta(24)-sterol reductase. (519 aa)
	APZ42_016290	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (663 aa)
	APZ42_017479	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial. (433 aa)
	EOG090X08P9	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (395 aa)
	APZ42_017008	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (659 aa)
	APZ42_016751	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (672 aa)
	APZ42_017398	Putative Medium-chain specific acyl-CoA dehydrogenase, mitochondrial. (410 aa)
	APZ42_017402	Putative Trans-2-enoyl-CoA reductase, mitochondrial. (361 aa)
	APZ42_018888	Uncharacterized protein. (474 aa)
	APZ42_018886	All-trans-retinol 13,14-reductase. (635 aa)
	APZ42_019805	Arc42. (406 aa)
	APZ42_022740	Short/branched chain specific acyl-CoA dehydrogenase. (405 aa)
	APZ42_022630	S5A_REDUCTASE domain-containing protein. (469 aa)
	APZ42_022378	tRNA-dihydrouridine synthase 1. (447 aa)
	APZ42_022936	tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family. (303 aa)
	APZ42_023434	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family. (645 aa)
	APZ42_024504	Putative Medium-chain specific acyl-CoA dehydrogenase, mitochondrial. (436 aa)
	APZ42_024656	Acyl-CoA dehydrogenase family member 9, mitochondrial. (632 aa)
	APZ42_026849	Acyl-CoA dehydrogenase family member 9, mitochondrial. (631 aa)
	APZ42_027373	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]. (672 aa)
	EOG090X097L	EOG090X097L. (301 aa)
	APZ42_013455	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (281 aa)
	APZ42_013622	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q); Belongs to the CybS family. (173 aa)
	APZ42_014483	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (477 aa)
	APZ42_015978	Uncharacterized protein. (622 aa)
	APZ42_018395	Flavin reductase (NADPH). (212 aa)
	APZ42_003058	Dihydropyrimidine dehydrogenase. (319 aa)
	APZ42_021633	All-trans-retinol 13,14-reductase. (632 aa)
	APZ42_018369	LBR_tudor domain-containing protein. (208 aa)
	APZ42_012479	3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)). (276 aa)
	APZ42_034123	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (691 aa)
	APZ42_013325	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial. (429 aa)
	APZ42_012838	Prostaglandin reductase 2. (340 aa)
	APZ42_026039	Oxygen-dependent coproporphyrinogen-III oxidase. (390 aa)
	APZ42_022733	Glutaryl-CoA dehydrogenase, mitochondrial. (436 aa)
	APZ42_022908	Prostaglandin reductase 2. (411 aa)
	APZ42_015350	tRNA-dihydrouridine(20) synthase (NAD(P)+)-like protein. (452 aa)
	APZ42_012845	Isobutyryl-CoA dehydrogenase, mitochondrial. (420 aa)
	APZ42_018348	Isovaleryl-CoA dehydrogenase, mitochondrial. (430 aa)
	APZ42_030296	7-dehydrocholesterol reductase. (451 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_003058	APZ42_016290	A0A162C3N6	A0A0P5Z0V4	Dihydropyrimidine dehydrogenase.	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.565
APZ42_003058	APZ42_023434	A0A162C3N6	A0A164UWZ8	Dihydropyrimidine dehydrogenase.	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	0.941
APZ42_003058	APZ42_026039	A0A162C3N6	A0A0P5Q6W8	Dihydropyrimidine dehydrogenase.	Oxygen-dependent coproporphyrinogen-III oxidase.	0.495
APZ42_012838	APZ42_017402	A0A0P5S5A7	A0A164ZUE4	Prostaglandin reductase 2.	Putative Trans-2-enoyl-CoA reductase, mitochondrial.	0.412
APZ42_012845	APZ42_015978	A0A0N8D2H3	A0A162NIK5	Isobutyryl-CoA dehydrogenase, mitochondrial.	Uncharacterized protein.	0.634
APZ42_012845	APZ42_016751	A0A0N8D2H3	A0A165A5H7	Isobutyryl-CoA dehydrogenase, mitochondrial.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.660
APZ42_012845	APZ42_017008	A0A0N8D2H3	A0A165AAN5	Isobutyryl-CoA dehydrogenase, mitochondrial.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.660
APZ42_012845	APZ42_017398	A0A0N8D2H3	A0A164ZUS4	Isobutyryl-CoA dehydrogenase, mitochondrial.	Putative Medium-chain specific acyl-CoA dehydrogenase, mitochondrial.	0.666
APZ42_012845	APZ42_017402	A0A0N8D2H3	A0A164ZUE4	Isobutyryl-CoA dehydrogenase, mitochondrial.	Putative Trans-2-enoyl-CoA reductase, mitochondrial.	0.667
APZ42_012845	APZ42_017479	A0A0N8D2H3	A0A0P5YXP7	Isobutyryl-CoA dehydrogenase, mitochondrial.	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial.	0.655
APZ42_012845	APZ42_017798	A0A0N8D2H3	A0A0P5XSS8	Isobutyryl-CoA dehydrogenase, mitochondrial.	Long-chain specific acyl-CoA dehydrogenase, mitochondrial.	0.680
APZ42_012845	APZ42_018348	A0A0N8D2H3	A0A0N7ZIY7	Isobutyryl-CoA dehydrogenase, mitochondrial.	Isovaleryl-CoA dehydrogenase, mitochondrial.	0.674
APZ42_012845	APZ42_018395	A0A0N8D2H3	A0A0P6GDC1	Isobutyryl-CoA dehydrogenase, mitochondrial.	Flavin reductase (NADPH).	0.431
APZ42_012845	APZ42_019805	A0A0N8D2H3	A0A164XQW5	Isobutyryl-CoA dehydrogenase, mitochondrial.	Arc42.	0.791
APZ42_012845	APZ42_022733	A0A0N8D2H3	A0A0P5GCI5	Isobutyryl-CoA dehydrogenase, mitochondrial.	Glutaryl-CoA dehydrogenase, mitochondrial.	0.678
APZ42_012845	APZ42_022740	A0A0N8D2H3	A0A164VS80	Isobutyryl-CoA dehydrogenase, mitochondrial.	Short/branched chain specific acyl-CoA dehydrogenase.	0.792
APZ42_012845	APZ42_024504	A0A0N8D2H3	A0A164TWV8	Isobutyryl-CoA dehydrogenase, mitochondrial.	Putative Medium-chain specific acyl-CoA dehydrogenase, mitochondrial.	0.660
APZ42_012845	APZ42_024656	A0A0N8D2H3	A0A164TVE5	Isobutyryl-CoA dehydrogenase, mitochondrial.	Acyl-CoA dehydrogenase family member 9, mitochondrial.	0.667
APZ42_012845	APZ42_026849	A0A0N8D2H3	A0A164RZK9	Isobutyryl-CoA dehydrogenase, mitochondrial.	Acyl-CoA dehydrogenase family member 9, mitochondrial.	0.670
APZ42_012845	APZ42_034123	A0A0N8D2H3	A0A0P5SV71	Isobutyryl-CoA dehydrogenase, mitochondrial.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.682