(50 nodes) Carbon-carbon lyase activity network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_029241	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase. (725 aa)
	APZ42_005416	TPP_enzyme_C domain-containing protein. (142 aa)
	APZ42_020644	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic. (1780 aa)
	APZ42_022248	Uncharacterized protein. (150 aa)
	APZ42_013623	Deoxyribose-phosphate aldolase. (318 aa)
	APZ42_026627	Molybdenum cofactor biosynthesis protein 1. (628 aa)
	APZ42_023484	S-adenosylmethionine decarboxylase proenzyme. (423 aa)
	APZ42_033661	Pyridoxal-dependent decarboxylase domain-containing protein 1. (748 aa)
	APZ42_028232	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (348 aa)
	APZ42_016500	N-acetylneuraminate lyase; Belongs to the DapA family. (330 aa)
	APZ42_016492	Histidine decarboxylase. (675 aa)
	APZ42_016311	Glutamate decarboxylase 1. (501 aa)
	APZ42_018235	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial. (598 aa)
	APZ42_019136	OHCU_decarbox domain-containing protein. (159 aa)
	APZ42_019179	Ornithine decarboxylase. (104 aa)
	APZ42_019335	DNA photolyase 2. (271 aa)
	APZ42_020289	D-dopachrome decarboxylase. (116 aa)
	APZ42_021140	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes. (381 aa)
	APZ42_021712	OHCU_decarbox domain-containing protein. (99 aa)
	APZ42_022152	Aromatic-L-amino-acid decarboxylase. (524 aa)
	APZ42_022792	Glutamate decarboxylase. (513 aa)
	APZ42_024494	L-allo-threonine aldolase. (389 aa)
	APZ42_025830	DNA photolyase 2. (155 aa)
	APZ42_027198	UDP-glucuronic acid decarboxylase 1. (309 aa)
	APZ42_028746	Gamma-glutamyl carboxylase. (686 aa)
	APZ42_031427	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial. (631 aa)
	APZ42_033709	Citrate lyase subunit beta, mitochondrial-like protein. (313 aa)
	APZ42_013431	Aromatic-L-amino-acid decarboxylase. (475 aa)
	APZ42_014163	Sphingosine-1-phosphate lyase 1. (553 aa)
	APZ42_020026	Engulfment and cell motility. (453 aa)
	APZ42_028068	2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family. (612 aa)
	APZ42_021401	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily. (339 aa)
	APZ42_021388	Aromatic-L-amino-acid decarboxylase. (623 aa)
	APZ42_026940	Aromatic-L-amino-acid decarboxylase. (479 aa)
	APZ42_014196	Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine. Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Eukaryotic type I sub-subfamily. (458 aa)
	APZ42_017016	Malonyl-CoA decarboxylase, mitochondrial. (581 aa)
	APZ42_021677	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family. (364 aa)
	APZ42_002812	Uncharacterized protein. (116 aa)
	APZ42_002833	Uncharacterized protein. (143 aa)
	APZ42_002990	Putative Coenzyme A biosynthesis bifunctional protein CoaBC. (98 aa)
	APZ42_007234	DNA photolyase 2. (108 aa)
	APZ42_013330	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (424 aa)
	APZ42_015062	Cysteine sulfinic acid decarboxylase. (141 aa)
	APZ42_014992	Phosphopantothenoylcysteine decarboxylase. (232 aa)
	APZ42_015986	Uncharacterized protein. (623 aa)
	APZ42_005099	Uncharacterized protein; Belongs to the HisA/HisF family. (91 aa)
	APZ42_005537	Uncharacterized protein. (141 aa)
	APZ42_001981	Ornithine decarboxylase-like protein. (145 aa)
	APZ42_009058	DNA photolyase 2. (109 aa)
	APZ42_002282	Uncharacterized protein. (189 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001981	APZ42_023484	A0A162CZI5	A0A0P5VTR7	Ornithine decarboxylase-like protein.	S-adenosylmethionine decarboxylase proenzyme.	0.445
APZ42_002282	APZ42_002812	A0A162CZ10	A0A164I0Z9	Uncharacterized protein.	Uncharacterized protein.	0.815
APZ42_002282	APZ42_005099	A0A162CZ10	A0A162EZB9	Uncharacterized protein.	Uncharacterized protein; Belongs to the HisA/HisF family.	0.413
APZ42_002282	APZ42_005416	A0A162CZ10	A0A162CTH0	Uncharacterized protein.	TPP_enzyme_C domain-containing protein.	0.903
APZ42_002282	APZ42_005537	A0A162CZ10	A0A162D4Y1	Uncharacterized protein.	Uncharacterized protein.	0.951
APZ42_002282	APZ42_016500	A0A162CZ10	A0A165AGF4	Uncharacterized protein.	N-acetylneuraminate lyase; Belongs to the DapA family.	0.512
APZ42_002282	APZ42_018235	A0A162CZ10	A0A164ZAD1	Uncharacterized protein.	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial.	0.683
APZ42_002282	APZ42_020644	A0A162CZ10	A0A162CC70	Uncharacterized protein.	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic.	0.785
APZ42_002282	APZ42_022248	A0A162CZ10	A0A162C935	Uncharacterized protein.	Uncharacterized protein.	0.614
APZ42_002282	APZ42_028068	A0A162CZ10	A0A0P4YUB7	Uncharacterized protein.	2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family.	0.840
APZ42_002282	APZ42_028746	A0A162CZ10	A0A164QCT5	Uncharacterized protein.	Gamma-glutamyl carboxylase.	0.515
APZ42_002282	APZ42_031427	A0A162CZ10	A0A164MW84	Uncharacterized protein.	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial.	0.683
APZ42_002812	APZ42_002282	A0A164I0Z9	A0A162CZ10	Uncharacterized protein.	Uncharacterized protein.	0.815
APZ42_002812	APZ42_005416	A0A164I0Z9	A0A162CTH0	Uncharacterized protein.	TPP_enzyme_C domain-containing protein.	0.533
APZ42_002812	APZ42_005537	A0A164I0Z9	A0A162D4Y1	Uncharacterized protein.	Uncharacterized protein.	0.815
APZ42_002812	APZ42_013431	A0A164I0Z9	A0A0P5H0R8	Uncharacterized protein.	Aromatic-L-amino-acid decarboxylase.	0.608
APZ42_002812	APZ42_014163	A0A164I0Z9	A0A0P5E8V0	Uncharacterized protein.	Sphingosine-1-phosphate lyase 1.	0.608
APZ42_002812	APZ42_015062	A0A164I0Z9	A0A162P580	Uncharacterized protein.	Cysteine sulfinic acid decarboxylase.	0.608
APZ42_002812	APZ42_016311	A0A164I0Z9	A0A165ACV4	Uncharacterized protein.	Glutamate decarboxylase 1.	0.608
APZ42_002812	APZ42_016492	A0A164I0Z9	A0A165AGA7	Uncharacterized protein.	Histidine decarboxylase.	0.608