(70 nodes) Ubiquitin-like protein peptidase activity network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_031694	Ubiquitin carboxyl-terminal hydrolase. (819 aa)
	APZ42_024166	Putative Sentrin-specific protease. (303 aa)
	APZ42_027416	26S proteasome non-ATPase regulatory subunit 14. (311 aa)
	APZ42_013754	COP9 signalosome complex subunit 5. (341 aa)
	APZ42_030954	Putative Ubiquitin carboxyl-terminal hydrolase 22; Belongs to the peptidase C19 family. (1024 aa)
	APZ42_011298	Ubiquitin carboxyl-terminal hydrolase. (490 aa)
	APZ42_026732	Ubiquitin carboxyl-terminal hydrolase. (783 aa)
	APZ42_022974	Inactive ubiquitin thioesterase FAM105A. (865 aa)
	APZ42_017153	Ataxin 3 variant ref. (325 aa)
	APZ42_015935	AMSH protease-like protein. (402 aa)
	APZ42_011035	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family. (1180 aa)
	APZ42_033086	Sentrin-specific protease. (677 aa)
	APZ42_030853	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (475 aa)
	APZ42_021695	Ubiquitin thioesterase OTU1. (311 aa)
	APZ42_016582	Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (274 aa)
	APZ42_033599	Ubiquitin carboxyl-terminal hydrolase. (787 aa)
	APZ42_026403	OTU domain-containing protein 6B. (298 aa)
	APZ42_024076	Ubiquitin carboxyl-terminal hydrolase. (382 aa)
	APZ42_033706	Ubiquitin carboxyl-terminal hydrolase. (785 aa)
	APZ42_011757	Ubiquitin carboxyl-terminal hydrolase. (229 aa)
	APZ42_027434	OTU domain-containing protein. (346 aa)
	APZ42_027047	Ubiquitin specific protease; Belongs to the peptidase C19 family. (553 aa)
	APZ42_020566	Zinc finger with UFM1-specific peptidase domain protein. (493 aa)
	APZ42_020825	Josephin-2. (251 aa)
	APZ42_031780	PPPDE peptidase domain-containing protein 1. (203 aa)
	EOG090X0AE1	Ubiquitin thioesterase otubain-like protein. (257 aa)
	EOG090X08T4	COP9 signalosome complex subunit. (310 aa)
	APZ42_022457	Ufm1-specific protease 2. (571 aa)
	EOG090X0A33	Ubiquitin carboxyl-terminal hydrolase. (318 aa)
	APZ42_020455	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family. (357 aa)
	APZ42_011380	Ubiquitin carboxyl-terminal hydrolase 47; Belongs to the peptidase C19 family. (1402 aa)
	APZ42_029428	Putative Sentrin-specific Protease. (944 aa)
	APZ42_027245	Putative Ubiquitin carboxyl-terminal hydrolase 10; Belongs to the peptidase C19 family. (756 aa)
	APZ42_026325	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family. (1107 aa)
	APZ42_030846	MINDY_DUB domain-containing protein. (935 aa)
	APZ42_023821	Ubiquitin carboxyl-terminal hydrolase. (855 aa)
	APZ42_025596	Ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family. (2353 aa)
	APZ42_015467	Sentrin-specific protease 8. (206 aa)
	APZ42_014664	Ubiquitin carboxyl-terminal hydrolase. (525 aa)
	APZ42_013763	C2H2-type domain-containing protein. (565 aa)
	APZ42_013599	Ubiquitin carboxyl-terminal hydrolase. (968 aa)
	APZ42_013215	USP domain-containing protein; Belongs to the peptidase C19 family. (338 aa)
	APZ42_012978	Lys-63-specific deubiquitinase BRCC36. (246 aa)
	APZ42_004212	26S proteasome non-ATPase regulatory subunit 7. (313 aa)
	APZ42_033875	Uncharacterized protein; Belongs to the peptidase C19 family. (1583 aa)
	APZ42_032694	Uncharacterized protein. (865 aa)
	APZ42_032736	Putative Ubiquitin carboxyl-terminal hydrolase 15. (1344 aa)
	APZ42_032783	Ubiquitin carboxyl-terminal hydrolase 31; Belongs to the peptidase C19 family. (703 aa)
	APZ42_031509	Uncharacterized protein. (1159 aa)
	APZ42_029819	Ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family. (2380 aa)
	APZ42_029746	Putative Ufm1-specific protease 1. (219 aa)
	APZ42_028949	Uncharacterized protein. (647 aa)
	APZ42_027789	ULP_PROTEASE domain-containing protein. (1014 aa)
	APZ42_027300	OTU domain-containing protein 7B. (864 aa)
	APZ42_027015	Uncharacterized protein. (309 aa)
	APZ42_026219	Uncharacterized protein. (101 aa)
	APZ42_025178	Ubiquitin carboxyl-terminal hydrolase 1; Belongs to the peptidase C19 family. (672 aa)
	APZ42_025020	CxC3 domain-containing protein. (610 aa)
	EOG090X06SH	Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (345 aa)
	APZ42_023866	Ubiquitin carboxyl-terminal hydrolase. (911 aa)
	APZ42_024062	Cylindromatosis. (777 aa)
	APZ42_022569	Ubiquitin carboxyl-terminal hydrolase. (500 aa)
	APZ42_021131	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (230 aa)
	APZ42_019240	DUF4205 domain-containing protein. (520 aa)
	APZ42_019243	DUF4205 domain-containing protein. (403 aa)
	APZ42_019242	DUF4205 domain-containing protein. (415 aa)
	APZ42_019260	Putative Ubiquitin carboxyl-terminal hydrolase 36; Belongs to the peptidase C19 family. (895 aa)
	APZ42_018584	Ubiquitin carboxyl-terminal hydrolase FAF-X. (210 aa)
	APZ42_017386	DUF862 domain-containing protein. (446 aa)
	APZ42_016709	OTU domain-containing protein 5-A. (586 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_004212	APZ42_011298	A0A164H788	A0A0N8E077	26S proteasome non-ATPase regulatory subunit 7.	Ubiquitin carboxyl-terminal hydrolase.	0.999
APZ42_004212	APZ42_011757	A0A164H788	A0A0P5ZIL3	26S proteasome non-ATPase regulatory subunit 7.	Ubiquitin carboxyl-terminal hydrolase.	0.773
APZ42_004212	APZ42_012978	A0A164H788	A0A162RAI6	26S proteasome non-ATPase regulatory subunit 7.	Lys-63-specific deubiquitinase BRCC36.	0.978
APZ42_004212	APZ42_013754	A0A164H788	A0A0N8D7N5	26S proteasome non-ATPase regulatory subunit 7.	COP9 signalosome complex subunit 5.	0.906
APZ42_004212	APZ42_014664	A0A164H788	A0A162PPH8	26S proteasome non-ATPase regulatory subunit 7.	Ubiquitin carboxyl-terminal hydrolase.	0.985
APZ42_004212	APZ42_015467	A0A164H788	A0A162PHZ9	26S proteasome non-ATPase regulatory subunit 7.	Sentrin-specific protease 8.	0.742
APZ42_004212	APZ42_017153	A0A164H788	A0A0P5E444	26S proteasome non-ATPase regulatory subunit 7.	Ataxin 3 variant ref.	0.428
APZ42_004212	APZ42_020825	A0A164H788	A0A0P6CG37	26S proteasome non-ATPase regulatory subunit 7.	Josephin-2.	0.428
APZ42_004212	APZ42_027416	A0A164H788	A0A0N8D5M8	26S proteasome non-ATPase regulatory subunit 7.	26S proteasome non-ATPase regulatory subunit 14.	0.999
APZ42_004212	APZ42_031509	A0A164H788	A0A164MSY8	26S proteasome non-ATPase regulatory subunit 7.	Uncharacterized protein.	0.734
APZ42_004212	APZ42_032694	A0A164H788	A0A164LSX9	26S proteasome non-ATPase regulatory subunit 7.	Uncharacterized protein.	0.986
APZ42_004212	EOG090X06SH	A0A164H788	A0A164U3Z8	26S proteasome non-ATPase regulatory subunit 7.	Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.929
APZ42_004212	EOG090X08T4	A0A164H788	A0A0P6GF60	26S proteasome non-ATPase regulatory subunit 7.	COP9 signalosome complex subunit.	0.421
APZ42_004212	EOG090X0A33	A0A164H788	A0A162CGF7	26S proteasome non-ATPase regulatory subunit 7.	Ubiquitin carboxyl-terminal hydrolase.	0.968
APZ42_011035	APZ42_027245	A0A0P5ENJ3	A0A162D933	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.	Putative Ubiquitin carboxyl-terminal hydrolase 10; Belongs to the peptidase C19 family.	0.641
APZ42_011035	APZ42_032694	A0A0P5ENJ3	A0A164LSX9	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.660
APZ42_011298	APZ42_004212	A0A0N8E077	A0A164H788	Ubiquitin carboxyl-terminal hydrolase.	26S proteasome non-ATPase regulatory subunit 7.	0.999
APZ42_011298	APZ42_011757	A0A0N8E077	A0A0P5ZIL3	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin carboxyl-terminal hydrolase.	0.604
APZ42_011298	APZ42_012978	A0A0N8E077	A0A162RAI6	Ubiquitin carboxyl-terminal hydrolase.	Lys-63-specific deubiquitinase BRCC36.	0.884
APZ42_011298	APZ42_013215	A0A0N8E077	A0A162R3M3	Ubiquitin carboxyl-terminal hydrolase.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.589