(9 nodes) COPII vesicle coat network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_019750	Transport Sec24B,-like protein. (400 aa)
	APZ42_021533	Transport protein Sec24B protein. (210 aa)
	APZ42_030563	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (803 aa)
	APZ42_023261	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (192 aa)
	APZ42_031428	Programmed cell death protein 6. (184 aa)
	APZ42_033286	Protein transport protein Sec24C. (1058 aa)
	APZ42_013796	Uncharacterized protein. (1206 aa)
	APZ42_019396	Transport protein Sec31A. (1244 aa)
	EOG090X07N7	SEC13 protein; Belongs to the WD repeat SEC13 family. (311 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_013796	APZ42_019396	A0A162QFE9	A0A0P5ZWL8	Uncharacterized protein.	Transport protein Sec31A.	0.979
APZ42_013796	APZ42_019750	A0A162QFE9	A0A162CM36	Uncharacterized protein.	Transport Sec24B,-like protein.	0.413
APZ42_013796	APZ42_021533	A0A162QFE9	A0A164WKY7	Uncharacterized protein.	Transport protein Sec24B protein.	0.932
APZ42_013796	APZ42_023261	A0A162QFE9	A0A164V2T5	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.932
APZ42_013796	APZ42_030563	A0A162QFE9	A0A0P5E3T1	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.991
APZ42_013796	APZ42_033286	A0A162QFE9	A0A164L8C2	Uncharacterized protein.	Protein transport protein Sec24C.	0.980
APZ42_013796	EOG090X07N7	A0A162QFE9	A0A162DGD4	Uncharacterized protein.	SEC13 protein; Belongs to the WD repeat SEC13 family.	0.990
APZ42_019396	APZ42_013796	A0A0P5ZWL8	A0A162QFE9	Transport protein Sec31A.	Uncharacterized protein.	0.979
APZ42_019396	APZ42_019750	A0A0P5ZWL8	A0A162CM36	Transport protein Sec31A.	Transport Sec24B,-like protein.	0.979
APZ42_019396	APZ42_021533	A0A0P5ZWL8	A0A164WKY7	Transport protein Sec31A.	Transport protein Sec24B protein.	0.979
APZ42_019396	APZ42_023261	A0A0P5ZWL8	A0A164V2T5	Transport protein Sec31A.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.994
APZ42_019396	APZ42_030563	A0A0P5ZWL8	A0A0P5E3T1	Transport protein Sec31A.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.999
APZ42_019396	APZ42_031428	A0A0P5ZWL8	A0A164MW53	Transport protein Sec31A.	Programmed cell death protein 6.	0.940
APZ42_019396	APZ42_033286	A0A0P5ZWL8	A0A164L8C2	Transport protein Sec31A.	Protein transport protein Sec24C.	0.987
APZ42_019396	EOG090X07N7	A0A0P5ZWL8	A0A162DGD4	Transport protein Sec31A.	SEC13 protein; Belongs to the WD repeat SEC13 family.	0.999
APZ42_019750	APZ42_013796	A0A162CM36	A0A162QFE9	Transport Sec24B,-like protein.	Uncharacterized protein.	0.413
APZ42_019750	APZ42_019396	A0A162CM36	A0A0P5ZWL8	Transport Sec24B,-like protein.	Transport protein Sec31A.	0.979
APZ42_019750	APZ42_021533	A0A162CM36	A0A164WKY7	Transport Sec24B,-like protein.	Transport protein Sec24B protein.	0.411
APZ42_019750	APZ42_023261	A0A162CM36	A0A164V2T5	Transport Sec24B,-like protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.932
APZ42_019750	APZ42_030563	A0A162CM36	A0A0P5E3T1	Transport Sec24B,-like protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.991