(43 nodes) Transport vesicle membrane network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_028742	General vesicular transport factor p115. (894 aa)
	APZ42_019396	Transport protein Sec31A. (1244 aa)
	APZ42_020216	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (228 aa)
	APZ42_019750	Transport Sec24B,-like protein. (400 aa)
	APZ42_018911	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1663 aa)
	EOG090X07N7	SEC13 protein; Belongs to the WD repeat SEC13 family. (311 aa)
	APZ42_029214	Loss of heterozygosity 12 chromosomal region 1 protein. (252 aa)
	APZ42_029568	Chromaffin granule amine transporter. (499 aa)
	APZ42_014065	Syntaxin-6; Belongs to the syntaxin family. (258 aa)
	APZ42_024201	AP-1 complex subunit gamma. (912 aa)
	APZ42_015385	Synapsin. (568 aa)
	APZ42_013796	Uncharacterized protein. (1206 aa)
	APZ42_012929	Vesicle-associated membrane protein 8. (122 aa)
	APZ42_011545	Protein transport Sec16A-like protein. (2112 aa)
	EOG090X0HBC	EOG090X0HBC; Belongs to the synaptobrevin family. (213 aa)
	APZ42_002399	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (349 aa)
	APZ42_001966	Class A rhodopsin G-protein-coupled receptor gprdop2. (104 aa)
	APZ42_033286	Protein transport protein Sec24C. (1058 aa)
	APZ42_032515	Synaptotagmin 1 protein, variant 2. (445 aa)
	EOG090X04X8	Vesicular glutamate transporter 2. (609 aa)
	APZ42_027223	Putative Synaptic vesicular amine transporter. (158 aa)
	APZ42_030649	Sortilin-related receptor. (2218 aa)
	APZ42_028621	MFS-type transporter SLC18B1. (640 aa)
	APZ42_028262	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (95 aa)
	APZ42_030563	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (803 aa)
	EOG090X04HR	Vesicular inhibitory amino acid transporter. (501 aa)
	APZ42_031428	Programmed cell death protein 6. (184 aa)
	APZ42_026733	Synaptogyrin-3. (246 aa)
	APZ42_023261	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (192 aa)
	APZ42_022183	Protein unc-13 A. (3026 aa)
	APZ42_020111	Putative Brefeldin A-inhibited guanine nucleotide-exchange protein 3. (1897 aa)
	EOG090X0GIP	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (213 aa)
	APZ42_022192	Putative Phorbol ester/diacylglycerol-binding protein unc-13. (1074 aa)
	APZ42_021533	Transport protein Sec24B protein. (210 aa)
	APZ42_021214	Putative Multiple C2 and transmembrane domain-containing protein 1. (988 aa)
	APZ42_020876	Putative Class A rhodopsin G-protein-coupled receptor gprdop2. (315 aa)
	APZ42_019499	Uncharacterized protein. (294 aa)
	APZ42_018039	MARVEL domain-containing protein. (230 aa)
	APZ42_016259	Putative Class A rhodopsin G-protein-coupled receptor gprdop2. (421 aa)
	APZ42_016928	Vesicle transport through interaction with t-SNAREsB. (227 aa)
	APZ42_018524	60S ribosomal export protein NMD3. (541 aa)
	APZ42_029114	Vesicle transport through interaction with t-SNAREsA. (218 aa)
	APZ42_023544	Vesicular acetylcholine transporter-A. (637 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001966	APZ42_016259	A0A164ILW2	A0A165AIN5	Class A rhodopsin G-protein-coupled receptor gprdop2.	Putative Class A rhodopsin G-protein-coupled receptor gprdop2.	0.475
APZ42_001966	APZ42_020876	A0A164ILW2	A0A164X5L5	Class A rhodopsin G-protein-coupled receptor gprdop2.	Putative Class A rhodopsin G-protein-coupled receptor gprdop2.	0.482
APZ42_002399	APZ42_012929	A0A164IAD9	A0A162RBY0	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Vesicle-associated membrane protein 8.	0.665
APZ42_002399	APZ42_018911	A0A164IAD9	A0A162CQ61	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.865
APZ42_002399	APZ42_020216	A0A164IAD9	A0A162CEI2	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.873
APZ42_002399	APZ42_024201	A0A164IAD9	A0A0P5LLS2	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit gamma.	0.996
APZ42_002399	APZ42_028262	A0A164IAD9	A0A164QM97	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.485
APZ42_002399	APZ42_030649	A0A164IAD9	A0A164NQH8	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Sortilin-related receptor.	0.604
APZ42_011545	APZ42_013796	A0A162SSN7	A0A162QFE9	Protein transport Sec16A-like protein.	Uncharacterized protein.	0.964
APZ42_011545	APZ42_018911	A0A162SSN7	A0A162CQ61	Protein transport Sec16A-like protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.640
APZ42_011545	APZ42_019396	A0A162SSN7	A0A0P5ZWL8	Protein transport Sec16A-like protein.	Transport protein Sec31A.	0.953
APZ42_011545	APZ42_019750	A0A162SSN7	A0A162CM36	Protein transport Sec16A-like protein.	Transport Sec24B,-like protein.	0.964
APZ42_011545	APZ42_021533	A0A162SSN7	A0A164WKY7	Protein transport Sec16A-like protein.	Transport protein Sec24B protein.	0.964
APZ42_011545	APZ42_023261	A0A162SSN7	A0A164V2T5	Protein transport Sec16A-like protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.938
APZ42_011545	APZ42_028742	A0A162SSN7	A0A0P5YTG8	Protein transport Sec16A-like protein.	General vesicular transport factor p115.	0.678
APZ42_011545	APZ42_030563	A0A162SSN7	A0A0P5E3T1	Protein transport Sec16A-like protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.993
APZ42_011545	APZ42_033286	A0A162SSN7	A0A164L8C2	Protein transport Sec16A-like protein.	Protein transport protein Sec24C.	0.990
APZ42_011545	EOG090X07N7	A0A162SSN7	A0A162DGD4	Protein transport Sec16A-like protein.	SEC13 protein; Belongs to the WD repeat SEC13 family.	0.997
APZ42_011545	EOG090X0GIP	A0A162SSN7	A0A0N8D828	Protein transport Sec16A-like protein.	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.741
APZ42_011545	EOG090X0HBC	A0A162SSN7	A0A162SSQ9	Protein transport Sec16A-like protein.	EOG090X0HBC; Belongs to the synaptobrevin family.	0.836