(8 nodes) HOPS complex network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_021596	Vacuolar protein sorting-associated protein 18. (921 aa)
	APZ42_028867	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family. (597 aa)
	APZ42_021444	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (866 aa)
	APZ42_011611	Vam6/Vps39-like protein. (869 aa)
	APZ42_034051	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family. (520 aa)
	APZ42_020471	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family. (281 aa)
	APZ42_019395	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family. (1087 aa)
	APZ42_019575	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (842 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011611	APZ42_019395	A0A162SUS3	A0A164Y4M2	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	0.998
APZ42_011611	APZ42_019575	A0A162SUS3	A0A164Y9W7	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	0.999
APZ42_011611	APZ42_020471	A0A162SUS3	A0A164XHL6	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.	0.968
APZ42_011611	APZ42_021444	A0A162SUS3	A0A162CAG7	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	0.998
APZ42_011611	APZ42_021596	A0A162SUS3	A0A164WJA5	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 18.	0.998
APZ42_011611	APZ42_028867	A0A162SUS3	A0A0N8AHQ0	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.	0.968
APZ42_011611	APZ42_034051	A0A162SUS3	A0A164KEB1	Vam6/Vps39-like protein.	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.	0.995
APZ42_019395	APZ42_011611	A0A164Y4M2	A0A162SUS3	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Vam6/Vps39-like protein.	0.998
APZ42_019395	APZ42_019575	A0A164Y4M2	A0A164Y9W7	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	0.998
APZ42_019395	APZ42_020471	A0A164Y4M2	A0A164XHL6	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.	0.967
APZ42_019395	APZ42_021444	A0A164Y4M2	A0A162CAG7	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	0.998
APZ42_019395	APZ42_021596	A0A164Y4M2	A0A164WJA5	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Vacuolar protein sorting-associated protein 18.	0.998
APZ42_019395	APZ42_028867	A0A164Y4M2	A0A0N8AHQ0	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.	0.967
APZ42_019395	APZ42_034051	A0A164Y4M2	A0A164KEB1	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.	0.984
APZ42_019575	APZ42_011611	A0A164Y9W7	A0A162SUS3	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Vam6/Vps39-like protein.	0.999
APZ42_019575	APZ42_019395	A0A164Y9W7	A0A164Y4M2	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	0.998
APZ42_019575	APZ42_020471	A0A164Y9W7	A0A164XHL6	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.	0.970
APZ42_019575	APZ42_021444	A0A164Y9W7	A0A162CAG7	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family.	0.999
APZ42_019575	APZ42_021596	A0A164Y9W7	A0A164WJA5	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Vacuolar protein sorting-associated protein 18.	0.998
APZ42_019575	APZ42_028867	A0A164Y9W7	A0A0N8AHQ0	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.	0.970