(12 nodes) Positive regulation of microtubule polymerization or depolymerization network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_021367	Miniature spindles-like protein. (712 aa)
	APZ42_020982	Miniature spindles-like protein. (1145 aa)
	APZ42_013628	Fidgetin protein 1; Belongs to the AAA ATPase family. (618 aa)
	APZ42_014226	Cysteine and histidine-rich domain-containing protein 1. (366 aa)
	APZ42_011171	Spastin; Belongs to the AAA ATPase family. (674 aa)
	APZ42_014875	Golgin subfamily A member. (1404 aa)
	APZ42_015541	Stathmin-3. (249 aa)
	APZ42_010944	CLIP-associating protein. (805 aa)
	APZ42_028603	N-acetyltransferase 9 protein. (178 aa)
	APZ42_023904	MMS19 nucleotide excision repair protein. (962 aa)
	APZ42_023623	Tubulin-specific chaperone cofactor E-like protein. (469 aa)
	APZ42_031874	Uncharacterized protein. (259 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_010944	APZ42_020982	A0A162TBN6	A0A164WW02	CLIP-associating protein.	Miniature spindles-like protein.	0.484
APZ42_010944	APZ42_021367	A0A162TBN6	A0A164WQY6	CLIP-associating protein.	Miniature spindles-like protein.	0.484
APZ42_014875	APZ42_020982	A0A0P5VUR1	A0A164WW02	Golgin subfamily A member.	Miniature spindles-like protein.	0.544
APZ42_014875	APZ42_021367	A0A0P5VUR1	A0A164WQY6	Golgin subfamily A member.	Miniature spindles-like protein.	0.544
APZ42_020982	APZ42_010944	A0A164WW02	A0A162TBN6	Miniature spindles-like protein.	CLIP-associating protein.	0.484
APZ42_020982	APZ42_014875	A0A164WW02	A0A0P5VUR1	Miniature spindles-like protein.	Golgin subfamily A member.	0.544
APZ42_020982	APZ42_021367	A0A164WW02	A0A164WQY6	Miniature spindles-like protein.	Miniature spindles-like protein.	0.939
APZ42_021367	APZ42_010944	A0A164WQY6	A0A162TBN6	Miniature spindles-like protein.	CLIP-associating protein.	0.484
APZ42_021367	APZ42_014875	A0A164WQY6	A0A0P5VUR1	Miniature spindles-like protein.	Golgin subfamily A member.	0.544
APZ42_021367	APZ42_020982	A0A164WQY6	A0A164WW02	Miniature spindles-like protein.	Miniature spindles-like protein.	0.939