(35 nodes) Activation of protein kinase activity network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_034306	Uncharacterized protein. (668 aa)
	APZ42_033777	TNF receptor-associated factor 4. (359 aa)
	APZ42_033257	Targeting protein for Xklp2-A. (698 aa)
	APZ42_033276	Putative Diacylglycerol kinase 1. (159 aa)
	APZ42_032297	Rapamycin-insensitive companion of mTOR. (1407 aa)
	APZ42_030476	Putative PRRC1 protein. (369 aa)
	APZ42_029471	Uncharacterized protein. (1081 aa)
	APZ42_026625	Cyclin-Y; Belongs to the cyclin family. (473 aa)
	APZ42_023448	Skb11-like protein. (416 aa)
	APZ42_022408	INCENP_ARK-bind domain-containing protein. (895 aa)
	APZ42_021254	TNF receptor-associated factor 4. (118 aa)
	APZ42_019574	Uncharacterized protein. (704 aa)
	APZ42_017810	Putative Cyclin-L1; Belongs to the cyclin family. (971 aa)
	APZ42_016661	DNA excision repair ERCC-6-like protein. (1184 aa)
	APZ42_024973	Cyclin dependent kinase 5 activator-like protein. (366 aa)
	APZ42_019333	Sprouty. (464 aa)
	APZ42_007681	Uncharacterized protein. (112 aa)
	APZ42_011481	Putative Speedy protein A. (328 aa)
	APZ42_012425	Kinase suppressor of Ras 1. (978 aa)
	APZ42_030753	Poly [ADP-ribose] polymerase. (315 aa)
	APZ42_030266	Serine/threonine-protein phosphatase PGAM5, mitochondrial. (279 aa)
	APZ42_034398	N-acetyltransferase domain-containing protein. (318 aa)
	APZ42_018829	RB1-inducible coiled-coil protein. (1116 aa)
	APZ42_017969	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (83 aa)
	APZ42_029439	GH16255p. (205 aa)
	APZ42_029250	Uncharacterized protein. (417 aa)
	APZ42_011181	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (454 aa)
	APZ42_017455	Target of rapamycin complex 2 subunit MAPKAP1. (430 aa)
	APZ42_023498	Putative Jelly Belly. (477 aa)
	APZ42_020012	MOB kinase activator 1B. (217 aa)
	APZ42_016805	3-phosphoinositide-dependent protein kinase. (511 aa)
	EOG090X09KD	Cyclin K-like protein; Belongs to the cyclin family. (407 aa)
	APZ42_021279	Calcium-binding protein. (338 aa)
	APZ42_000152	Aurora borealis protein. (165 aa)
	EOG090X0BPM	CDK-activating kinase assembly factor MAT1. (344 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000152	APZ42_022408	A0A164JVQ3	A0A164VH38	Aurora borealis protein.	INCENP_ARK-bind domain-containing protein.	0.722
APZ42_011181	APZ42_018829	A0A0P5Z0K4	A0A162CPY9	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	RB1-inducible coiled-coil protein.	0.998
APZ42_011181	APZ42_023448	A0A0P5Z0K4	A0A164UXK8	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	Skb11-like protein.	0.624
APZ42_012425	APZ42_016805	A0A162RSW9	A0A0P5NQ39	Kinase suppressor of Ras 1.	3-phosphoinositide-dependent protein kinase.	0.604
APZ42_012425	APZ42_019333	A0A162RSW9	A0A0P5BAD9	Kinase suppressor of Ras 1.	Sprouty.	0.719
APZ42_012425	APZ42_019574	A0A162RSW9	A0A164YA42	Kinase suppressor of Ras 1.	Uncharacterized protein.	0.554
APZ42_012425	APZ42_033257	A0A162RSW9	A0A164L9Q4	Kinase suppressor of Ras 1.	Targeting protein for Xklp2-A.	0.405
APZ42_016661	EOG090X0BPM	A0A165A3J8	A0A0P5JAI4	DNA excision repair ERCC-6-like protein.	CDK-activating kinase assembly factor MAT1.	0.692
APZ42_016805	APZ42_012425	A0A0P5NQ39	A0A162RSW9	3-phosphoinositide-dependent protein kinase.	Kinase suppressor of Ras 1.	0.604
APZ42_016805	APZ42_017455	A0A0P5NQ39	A0A0P5PFZ7	3-phosphoinositide-dependent protein kinase.	Target of rapamycin complex 2 subunit MAPKAP1.	0.412
APZ42_016805	APZ42_023448	A0A0P5NQ39	A0A164UXK8	3-phosphoinositide-dependent protein kinase.	Skb11-like protein.	0.623
APZ42_016805	APZ42_032297	A0A0P5NQ39	A0A164M2X7	3-phosphoinositide-dependent protein kinase.	Rapamycin-insensitive companion of mTOR.	0.535
APZ42_017455	APZ42_016805	A0A0P5PFZ7	A0A0P5NQ39	Target of rapamycin complex 2 subunit MAPKAP1.	3-phosphoinositide-dependent protein kinase.	0.412
APZ42_017455	APZ42_032297	A0A0P5PFZ7	A0A164M2X7	Target of rapamycin complex 2 subunit MAPKAP1.	Rapamycin-insensitive companion of mTOR.	0.999
APZ42_017810	EOG090X09KD	A0A164ZJ54	A0A0P5L3T8	Putative Cyclin-L1; Belongs to the cyclin family.	Cyclin K-like protein; Belongs to the cyclin family.	0.841
APZ42_017810	EOG090X0BPM	A0A164ZJ54	A0A0P5JAI4	Putative Cyclin-L1; Belongs to the cyclin family.	CDK-activating kinase assembly factor MAT1.	0.729
APZ42_018829	APZ42_011181	A0A162CPY9	A0A0P5Z0K4	RB1-inducible coiled-coil protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.998
APZ42_018829	APZ42_023448	A0A162CPY9	A0A164UXK8	RB1-inducible coiled-coil protein.	Skb11-like protein.	0.597
APZ42_019333	APZ42_012425	A0A0P5BAD9	A0A162RSW9	Sprouty.	Kinase suppressor of Ras 1.	0.719
APZ42_019574	APZ42_012425	A0A164YA42	A0A162RSW9	Uncharacterized protein.	Kinase suppressor of Ras 1.	0.554