(34 nodes) Adherens junction organization network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_023820	Lap4 protein. (1949 aa)
	APZ42_012229	Ras-related protein Rab-11A. (215 aa)
	APZ42_020914	Spectrin beta chain. (3333 aa)
	APZ42_012615	Rho-related GTP-binding protein RhoF. (223 aa)
	APZ42_023867	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein. (1597 aa)
	APZ42_023748	Tyrosine-protein kinase. (537 aa)
	APZ42_032261	Nucleoside diphosphate kinase. (154 aa)
	APZ42_016272	Putative Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (523 aa)
	APZ42_017014	Catenin alpha. (953 aa)
	APZ42_033777	TNF receptor-associated factor 4. (359 aa)
	APZ42_003266	Rap guanine nucleotide exchange factor 6. (42 aa)
	APZ42_030789	Ras-related protein Rap-1B. (131 aa)
	EOG090X09SP	Partitioning defective 6 gamma. (322 aa)
	APZ42_004669	Ras GTP-binding protein Rho1. (41 aa)
	APZ42_012783	KLF-15/D-BTEB2-like protein. (454 aa)
	APZ42_027371	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (624 aa)
	APZ42_013520	Sptzle 1B. (218 aa)
	APZ42_020542	Nucleoside diphosphate kinase. (154 aa)
	APZ42_016095	Tyrosine-protein kinase. (524 aa)
	APZ42_016993	Tyrosine-protein kinase. (393 aa)
	APZ42_002074	Partitioning defective. (259 aa)
	APZ42_027166	Kin of IRRE 1-like protein. (484 aa)
	APZ42_023440	Catenin Delta-2. (955 aa)
	APZ42_023495	Putative SH3 domain-containing kinase-binding protein. (650 aa)
	APZ42_022686	Dynamin. (531 aa)
	APZ42_021977	Putative Partitioning-defective 3 protein B. (609 aa)
	APZ42_021316	Nephrin. (796 aa)
	APZ42_020921	Putative Spectrin beta chain. (417 aa)
	APZ42_019870	Lap4,-like protein. (836 aa)
	APZ42_019490	MAGUK p55 subfamily member 6; Belongs to the MAGUK family. (1368 aa)
	APZ42_011853	39S ribosomal protein L20, mitochondrial; Belongs to the bacterial ribosomal protein bL20 family. (1327 aa)
	APZ42_012186	Tight junction protein ZO-1. (949 aa)
	APZ42_014594	Rap guanine nucleotide exchange factor 6. (1581 aa)
	APZ42_026442	Protein crumbs. (2334 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_002074	APZ42_004669	A0A162C620	A0A164GWT3	Partitioning defective.	Ras GTP-binding protein Rho1.	0.648
APZ42_002074	APZ42_012186	A0A162C620	A0A162S7V1	Partitioning defective.	Tight junction protein ZO-1.	0.589
APZ42_002074	APZ42_012615	A0A162C620	A0A0P5KP21	Partitioning defective.	Rho-related GTP-binding protein RhoF.	0.648
APZ42_002074	APZ42_019490	A0A162C620	A0A164Y7P7	Partitioning defective.	MAGUK p55 subfamily member 6; Belongs to the MAGUK family.	0.732
APZ42_002074	APZ42_023867	A0A162C620	A0A0P5BTQ1	Partitioning defective.	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein.	0.699
APZ42_002074	APZ42_026442	A0A162C620	A0A162EDC0	Partitioning defective.	Protein crumbs.	0.552
APZ42_002074	APZ42_027371	A0A162C620	A0A0P5WIM4	Partitioning defective.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.972
APZ42_002074	EOG090X09SP	A0A162C620	A0A164KBQ7	Partitioning defective.	Partitioning defective 6 gamma.	0.971
APZ42_003266	APZ42_004669	A0A164HNS0	A0A164GWT3	Rap guanine nucleotide exchange factor 6.	Ras GTP-binding protein Rho1.	0.559
APZ42_003266	APZ42_012186	A0A164HNS0	A0A162S7V1	Rap guanine nucleotide exchange factor 6.	Tight junction protein ZO-1.	0.656
APZ42_003266	APZ42_012229	A0A164HNS0	A0A162CY40	Rap guanine nucleotide exchange factor 6.	Ras-related protein Rab-11A.	0.578
APZ42_003266	APZ42_012615	A0A164HNS0	A0A0P5KP21	Rap guanine nucleotide exchange factor 6.	Rho-related GTP-binding protein RhoF.	0.559
APZ42_003266	APZ42_013520	A0A164HNS0	A0A0P6FSD2	Rap guanine nucleotide exchange factor 6.	Sptzle 1B.	0.837
APZ42_003266	APZ42_023867	A0A164HNS0	A0A0P5BTQ1	Rap guanine nucleotide exchange factor 6.	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein.	0.745
APZ42_003266	APZ42_030789	A0A164HNS0	A0A164NC55	Rap guanine nucleotide exchange factor 6.	Ras-related protein Rap-1B.	0.837
APZ42_004669	APZ42_002074	A0A164GWT3	A0A162C620	Ras GTP-binding protein Rho1.	Partitioning defective.	0.648
APZ42_004669	APZ42_003266	A0A164GWT3	A0A164HNS0	Ras GTP-binding protein Rho1.	Rap guanine nucleotide exchange factor 6.	0.559
APZ42_004669	APZ42_012186	A0A164GWT3	A0A162S7V1	Ras GTP-binding protein Rho1.	Tight junction protein ZO-1.	0.683
APZ42_004669	APZ42_013520	A0A164GWT3	A0A0P6FSD2	Ras GTP-binding protein Rho1.	Sptzle 1B.	0.720
APZ42_004669	APZ42_014594	A0A164GWT3	A0A162PRK9	Ras GTP-binding protein Rho1.	Rap guanine nucleotide exchange factor 6.	0.559