(40 nodes) Nuclear periphery network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_026668	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (915 aa)
	APZ42_026805	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (981 aa)
	APZ42_030851	Ubiquitin-protein e3 ligase. (394 aa)
	APZ42_030848	Putative E3 ubiquitin-protein ligase Topors. (539 aa)
	APZ42_013754	COP9 signalosome complex subunit 5. (341 aa)
	APZ42_015155	E3 SUMO-protein ligase PIAS1. (674 aa)
	APZ42_011346	Macrophage erythroblast attacher. (447 aa)
	APZ42_011508	Actin-related protein 3; Belongs to the actin family. (420 aa)
	EOG090X05RK	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (374 aa)
	APZ42_023314	Exosome complex exonuclease RRP41. (246 aa)
	APZ42_017029	DNA excision repair protein ERCC-8. (403 aa)
	EOG090X09DD	Exosome complex component RRP4. (292 aa)
	APZ42_027194	Exosome component 10. (822 aa)
	APZ42_022261	Anaphase promoting complex subunit 4. (775 aa)
	APZ42_029136	Germ cell-less 1-like protein. (486 aa)
	APZ42_033253	Putative SAFB transcription modulator. (950 aa)
	APZ42_013353	Lamin-A; Belongs to the intermediate filament family. (599 aa)
	APZ42_024125	Ubiquitin-protein e3 ligase. (238 aa)
	APZ42_029688	40S ribosomal protein S3. (242 aa)
	APZ42_000921	Nuclear pore complex protein Nup155. (202 aa)
	EOG090X0CWA	Exosome complex component RRP42. (290 aa)
	APZ42_013510	Nuclear pore complex protein Nup155. (224 aa)
	APZ42_011919	Germinal-center associated nuclear-like protein. (1044 aa)
	APZ42_007055	Nuclear pore complex protein Nup155. (121 aa)
	APZ42_002939	Putative Xmas-2 protein. (206 aa)
	APZ42_034504	Uncharacterized protein. (909 aa)
	APZ42_033665	Putative rRNA-processing protein EBP2. (328 aa)
	APZ42_033751	RING-type domain-containing protein. (234 aa)
	APZ42_031077	Nuclear pore complex Nup153-like protein. (1496 aa)
	APZ42_030856	RING-type domain-containing protein. (240 aa)
	APZ42_029035	COP9 signalosome complex subunit 7a. (266 aa)
	APZ42_027008	Epsin-1. (598 aa)
	APZ42_026610	Putative SUN domain-containing protein 1. (627 aa)
	APZ42_026545	Nuclear pore complex protein Nup155. (588 aa)
	APZ42_026406	Nucleoporin 154kD, isoform A. (338 aa)
	APZ42_025680	Exosome complex exonuclease RRP44; Belongs to the RNR ribonuclease family. (958 aa)
	APZ42_022658	RING-type domain-containing protein. (165 aa)
	APZ42_017958	Nucleoprotein TPR. (2316 aa)
	APZ42_017702	Interferon regulatory factor 2-binding protein 2-A. (644 aa)
	APZ42_017491	HRDC domain-containing protein. (512 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000921	APZ42_007055	A0A162C8L9	A0A164FJF0	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.467
APZ42_000921	APZ42_017958	A0A162C8L9	A0A164ZGU0	Nuclear pore complex protein Nup155.	Nucleoprotein TPR.	0.749
APZ42_000921	APZ42_026406	A0A162C8L9	A0A164S642	Nuclear pore complex protein Nup155.	Nucleoporin 154kD, isoform A.	0.497
APZ42_000921	APZ42_026668	A0A162C8L9	A0A164S396	Nuclear pore complex protein Nup155.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.913
APZ42_000921	APZ42_031077	A0A162C8L9	A0A164N5J2	Nuclear pore complex protein Nup155.	Nuclear pore complex Nup153-like protein.	0.872
APZ42_002939	APZ42_011919	A0A164HXZ0	A0A162SDE6	Putative Xmas-2 protein.	Germinal-center associated nuclear-like protein.	0.402
APZ42_002939	APZ42_017958	A0A164HXZ0	A0A164ZGU0	Putative Xmas-2 protein.	Nucleoprotein TPR.	0.517
APZ42_002939	APZ42_031077	A0A164HXZ0	A0A164N5J2	Putative Xmas-2 protein.	Nuclear pore complex Nup153-like protein.	0.724
APZ42_007055	APZ42_000921	A0A164FJF0	A0A162C8L9	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.467
APZ42_007055	APZ42_013510	A0A164FJF0	A0A162QT61	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.404
APZ42_007055	APZ42_017958	A0A164FJF0	A0A164ZGU0	Nuclear pore complex protein Nup155.	Nucleoprotein TPR.	0.749
APZ42_007055	APZ42_026545	A0A164FJF0	A0A164S4W4	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.441
APZ42_007055	APZ42_026668	A0A164FJF0	A0A164S396	Nuclear pore complex protein Nup155.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.913
APZ42_007055	APZ42_031077	A0A164FJF0	A0A164N5J2	Nuclear pore complex protein Nup155.	Nuclear pore complex Nup153-like protein.	0.872
APZ42_011346	APZ42_013754	A0A0P4XA94	A0A0N8D7N5	Macrophage erythroblast attacher.	COP9 signalosome complex subunit 5.	0.526
APZ42_011508	APZ42_034504	A0A0P5CCT3	A0A164K2U6	Actin-related protein 3; Belongs to the actin family.	Uncharacterized protein.	0.576
APZ42_011508	EOG090X05RK	A0A0P5CCT3	A0A0P5E8Q3	Actin-related protein 3; Belongs to the actin family.	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.	0.999
APZ42_011919	APZ42_002939	A0A162SDE6	A0A164HXZ0	Germinal-center associated nuclear-like protein.	Putative Xmas-2 protein.	0.402
APZ42_011919	APZ42_017958	A0A162SDE6	A0A164ZGU0	Germinal-center associated nuclear-like protein.	Nucleoprotein TPR.	0.517
APZ42_011919	APZ42_031077	A0A162SDE6	A0A164N5J2	Germinal-center associated nuclear-like protein.	Nuclear pore complex Nup153-like protein.	0.724