(9 nodes) Mitochondrial protein processing network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_017928	Mitochondrial-processing peptidase subunit alpha. (339 aa)
	EOG090X0CKN	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family. (245 aa)
	APZ42_013828	AFG3 2-like protein. (796 aa)
	APZ42_030800	Metalloendopeptidase OMA1, mitochondrial. (417 aa)
	APZ42_019010	Mitochondrial intermediate peptidase. (718 aa)
	APZ42_014630	AFG3 2-like protein. (806 aa)
	APZ42_013206	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family. (650 aa)
	APZ42_029577	Mitochondrial-processing peptidase subunit alpha. (43 aa)
	APZ42_026803	Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family. (478 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_013206	APZ42_013828	A0A162R4G6	A0A0P4WQV2	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	AFG3 2-like protein.	0.471
APZ42_013206	APZ42_014630	A0A162R4G6	A0A162PSJ7	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	AFG3 2-like protein.	0.481
APZ42_013206	APZ42_017928	A0A162R4G6	A0A164ZFX1	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	Mitochondrial-processing peptidase subunit alpha.	0.702
APZ42_013206	APZ42_026803	A0A162R4G6	A0A164RZD6	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.	0.586
APZ42_013206	APZ42_029577	A0A162R4G6	A0A164PPD7	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	Mitochondrial-processing peptidase subunit alpha.	0.642
APZ42_013206	APZ42_030800	A0A162R4G6	A0A0P5AW63	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	Metalloendopeptidase OMA1, mitochondrial.	0.747
APZ42_013206	EOG090X0CKN	A0A162R4G6	A0A0N8DA16	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.528
APZ42_013828	APZ42_013206	A0A0P4WQV2	A0A162R4G6	AFG3 2-like protein.	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	0.471
APZ42_013828	APZ42_014630	A0A0P4WQV2	A0A162PSJ7	AFG3 2-like protein.	AFG3 2-like protein.	0.856
APZ42_013828	APZ42_017928	A0A0P4WQV2	A0A164ZFX1	AFG3 2-like protein.	Mitochondrial-processing peptidase subunit alpha.	0.870
APZ42_013828	APZ42_019010	A0A0P4WQV2	A0A0P5Z5C8	AFG3 2-like protein.	Mitochondrial intermediate peptidase.	0.417
APZ42_013828	APZ42_026803	A0A0P4WQV2	A0A164RZD6	AFG3 2-like protein.	Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.	0.828
APZ42_013828	APZ42_029577	A0A0P4WQV2	A0A164PPD7	AFG3 2-like protein.	Mitochondrial-processing peptidase subunit alpha.	0.749
APZ42_013828	APZ42_030800	A0A0P4WQV2	A0A0P5AW63	AFG3 2-like protein.	Metalloendopeptidase OMA1, mitochondrial.	0.723
APZ42_013828	EOG090X0CKN	A0A0P4WQV2	A0A0N8DA16	AFG3 2-like protein.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.400
APZ42_014630	APZ42_013206	A0A162PSJ7	A0A162R4G6	AFG3 2-like protein.	ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.	0.481
APZ42_014630	APZ42_013828	A0A162PSJ7	A0A0P4WQV2	AFG3 2-like protein.	AFG3 2-like protein.	0.856
APZ42_014630	APZ42_017928	A0A162PSJ7	A0A164ZFX1	AFG3 2-like protein.	Mitochondrial-processing peptidase subunit alpha.	0.830
APZ42_014630	APZ42_019010	A0A162PSJ7	A0A0P5Z5C8	AFG3 2-like protein.	Mitochondrial intermediate peptidase.	0.417
APZ42_014630	APZ42_026803	A0A162PSJ7	A0A164RZD6	AFG3 2-like protein.	Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.	0.813