(36 nodes) Tube formation network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_032544	Uncharacterized protein. (3708 aa)
	APZ42_033286	Protein transport protein Sec24C. (1058 aa)
	APZ42_034132	Matrix metalloproteinase-24. (652 aa)
	APZ42_034351	Uncharacterized protein. (584 aa)
	APZ42_002304	Trachealess protein. (105 aa)
	APZ42_004669	Ras GTP-binding protein Rho1. (41 aa)
	APZ42_010975	WD repeat-containing protein 7. (1472 aa)
	APZ42_011068	Microtubule-associated protein. (298 aa)
	APZ42_011576	Talin-2. (2425 aa)
	APZ42_012357	UDP-N-acetylhexosamine pyrophosphorylase 1-like protein. (525 aa)
	APZ42_014678	DNA-binding protein SATB. (924 aa)
	APZ42_015074	Microtubule-actin cross-linking factor 1. (5007 aa)
	APZ42_028338	Putative Survival motor neuron protein. (191 aa)
	APZ42_021644	Uncharacterized protein. (1223 aa)
	EOG090X0GIP	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (213 aa)
	APZ42_030563	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (803 aa)
	APZ42_012615	Rho-related GTP-binding protein RhoF. (223 aa)
	APZ42_032698	Protein fuzzy. (410 aa)
	APZ42_028579	TBC1 domain family member 10A. (470 aa)
	APZ42_028399	Chitin synthase variant. (1594 aa)
	APZ42_016247	Uncharacterized protein. (789 aa)
	APZ42_023838	Ubiquinone biosynthesis protein COQ9, mitochondrial. (588 aa)
	EOG090X06TU	Zinc finger protein ZPR1. (453 aa)
	APZ42_014248	Ras-related protein Rab-35. (201 aa)
	APZ42_019239	Serologically defined colon cancer antigen. (515 aa)
	APZ42_016443	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1. (1907 aa)
	APZ42_016875	E3 ubiquitin-protein ligase mind-bomb. (667 aa)
	APZ42_016879	E3 ubiquitin-protein ligase mind-bomb. (422 aa)
	APZ42_019862	Phosphatidylinositide phosphatase SAC1. (317 aa)
	APZ42_021639	Chitin synthase 2. (876 aa)
	APZ42_022275	Dynein heavy chain, cytoplasmic. (4656 aa)
	APZ42_024107	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (532 aa)
	APZ42_029763	KASH domain-containing protein. (1068 aa)
	APZ42_030473	Rabconnectin-3A. (3428 aa)
	APZ42_032293	Microsomal triglyceride transfer protein large subunit. (873 aa)
	APZ42_032582	FYVE-type domain-containing protein. (115 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_004669	APZ42_011576	A0A164GWT3	A0A162STT1	Ras GTP-binding protein Rho1.	Talin-2.	0.460
APZ42_004669	APZ42_015074	A0A164GWT3	A0A162P6X1	Ras GTP-binding protein Rho1.	Microtubule-actin cross-linking factor 1.	0.703
APZ42_004669	APZ42_016443	A0A164GWT3	A0A165AFB9	Ras GTP-binding protein Rho1.	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1.	0.587
APZ42_004669	APZ42_016875	A0A164GWT3	A0A165A7T5	Ras GTP-binding protein Rho1.	E3 ubiquitin-protein ligase mind-bomb.	0.448
APZ42_004669	APZ42_016879	A0A164GWT3	A0A165A7R7	Ras GTP-binding protein Rho1.	E3 ubiquitin-protein ligase mind-bomb.	0.448
APZ42_010975	APZ42_028338	A0A162TCW3	A0A162D7F4	WD repeat-containing protein 7.	Putative Survival motor neuron protein.	0.678
APZ42_010975	APZ42_030473	A0A162TCW3	A0A164NJN9	WD repeat-containing protein 7.	Rabconnectin-3A.	0.759
APZ42_011576	APZ42_004669	A0A162STT1	A0A164GWT3	Talin-2.	Ras GTP-binding protein Rho1.	0.460
APZ42_011576	APZ42_012615	A0A162STT1	A0A0P5KP21	Talin-2.	Rho-related GTP-binding protein RhoF.	0.460
APZ42_012357	APZ42_016875	A0A162RWK7	A0A165A7T5	UDP-N-acetylhexosamine pyrophosphorylase 1-like protein.	E3 ubiquitin-protein ligase mind-bomb.	0.432
APZ42_012357	APZ42_016879	A0A162RWK7	A0A165A7R7	UDP-N-acetylhexosamine pyrophosphorylase 1-like protein.	E3 ubiquitin-protein ligase mind-bomb.	0.432
APZ42_012357	APZ42_021639	A0A162RWK7	A0A164WEX1	UDP-N-acetylhexosamine pyrophosphorylase 1-like protein.	Chitin synthase 2.	0.796
APZ42_012357	APZ42_021644	A0A162RWK7	A0A162CJN9	UDP-N-acetylhexosamine pyrophosphorylase 1-like protein.	Uncharacterized protein.	0.796
APZ42_012357	APZ42_028399	A0A162RWK7	A0A0P5V0F4	UDP-N-acetylhexosamine pyrophosphorylase 1-like protein.	Chitin synthase variant.	0.796
APZ42_012357	APZ42_030563	A0A162RWK7	A0A0P5E3T1	UDP-N-acetylhexosamine pyrophosphorylase 1-like protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.567
APZ42_012615	APZ42_011576	A0A0P5KP21	A0A162STT1	Rho-related GTP-binding protein RhoF.	Talin-2.	0.460
APZ42_012615	APZ42_015074	A0A0P5KP21	A0A162P6X1	Rho-related GTP-binding protein RhoF.	Microtubule-actin cross-linking factor 1.	0.703
APZ42_012615	APZ42_016443	A0A0P5KP21	A0A165AFB9	Rho-related GTP-binding protein RhoF.	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1.	0.587
APZ42_012615	APZ42_016875	A0A0P5KP21	A0A165A7T5	Rho-related GTP-binding protein RhoF.	E3 ubiquitin-protein ligase mind-bomb.	0.448
APZ42_012615	APZ42_016879	A0A0P5KP21	A0A165A7R7	Rho-related GTP-binding protein RhoF.	E3 ubiquitin-protein ligase mind-bomb.	0.448