(29 nodes) Regulation of protein import into nucleus network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_032741	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (688 aa)
	APZ42_029205	Nucleoporin p58/p45. (480 aa)
	APZ42_028093	Uncharacterized protein. (619 aa)
	APZ42_029018	BTB domain-containing protein. (294 aa)
	APZ42_013510	Nuclear pore complex protein Nup155. (224 aa)
	APZ42_007055	Nuclear pore complex protein Nup155. (121 aa)
	APZ42_028096	Uncharacterized protein. (550 aa)
	APZ42_005717	BTB domain-containing protein. (141 aa)
	APZ42_000921	Nuclear pore complex protein Nup155. (202 aa)
	APZ42_019458	Putative Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (190 aa)
	APZ42_026829	Lipocln_cytosolic_FA-bd_dom domain-containing protein. (128 aa)
	APZ42_024409	Roadkill protein. (340 aa)
	APZ42_024810	BTB domain-containing protein. (399 aa)
	APZ42_026406	Nucleoporin 154kD, isoform A. (338 aa)
	APZ42_026545	Nuclear pore complex protein Nup155. (588 aa)
	APZ42_027346	Uncharacterized protein. (602 aa)
	APZ42_016912	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (193 aa)
	APZ42_016927	Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (226 aa)
	APZ42_017689	Apolipoprotein D; Belongs to the calycin superfamily. Lipocalin family. (200 aa)
	APZ42_025525	Putative Class c scavenger receptor sushi/scr/ccp. (145 aa)
	APZ42_014202	BTB domain-containing protein. (254 aa)
	APZ42_014173	Uncharacterized protein. (563 aa)
	APZ42_017278	Uncharacterized protein. (582 aa)
	APZ42_023822	Serine/threonine-protein kinase LATS1. (1138 aa)
	APZ42_034335	Protein TIMELESS. (1183 aa)
	APZ42_019982	Btb/poz domain-containing protein. (322 aa)
	APZ42_024061	Timeless. (972 aa)
	APZ42_022511	Intraflagellar transport protein 140. (1352 aa)
	APZ42_018131	Non-specific serine/threonine protein kinase. (649 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000921	APZ42_007055	A0A162C8L9	A0A164FJF0	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.467
APZ42_000921	APZ42_026406	A0A162C8L9	A0A164S642	Nuclear pore complex protein Nup155.	Nucleoporin 154kD, isoform A.	0.497
APZ42_000921	APZ42_029205	A0A162C8L9	A0A164PUN4	Nuclear pore complex protein Nup155.	Nucleoporin p58/p45.	0.856
APZ42_007055	APZ42_000921	A0A164FJF0	A0A162C8L9	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.467
APZ42_007055	APZ42_013510	A0A164FJF0	A0A162QT61	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.404
APZ42_007055	APZ42_026545	A0A164FJF0	A0A164S4W4	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.441
APZ42_007055	APZ42_029205	A0A164FJF0	A0A164PUN4	Nuclear pore complex protein Nup155.	Nucleoporin p58/p45.	0.856
APZ42_013510	APZ42_007055	A0A162QT61	A0A164FJF0	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.404
APZ42_013510	APZ42_029205	A0A162QT61	A0A164PUN4	Nuclear pore complex protein Nup155.	Nucleoporin p58/p45.	0.856
APZ42_022511	APZ42_032741	A0A164VK28	A0A164LUH8	Intraflagellar transport protein 140.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.727
APZ42_026406	APZ42_000921	A0A164S642	A0A162C8L9	Nucleoporin 154kD, isoform A.	Nuclear pore complex protein Nup155.	0.497
APZ42_026406	APZ42_029205	A0A164S642	A0A164PUN4	Nucleoporin 154kD, isoform A.	Nucleoporin p58/p45.	0.856
APZ42_026545	APZ42_007055	A0A164S4W4	A0A164FJF0	Nuclear pore complex protein Nup155.	Nuclear pore complex protein Nup155.	0.441
APZ42_026545	APZ42_029205	A0A164S4W4	A0A164PUN4	Nuclear pore complex protein Nup155.	Nucleoporin p58/p45.	0.856
APZ42_029205	APZ42_000921	A0A164PUN4	A0A162C8L9	Nucleoporin p58/p45.	Nuclear pore complex protein Nup155.	0.856
APZ42_029205	APZ42_007055	A0A164PUN4	A0A164FJF0	Nucleoporin p58/p45.	Nuclear pore complex protein Nup155.	0.856
APZ42_029205	APZ42_013510	A0A164PUN4	A0A162QT61	Nucleoporin p58/p45.	Nuclear pore complex protein Nup155.	0.856
APZ42_029205	APZ42_026406	A0A164PUN4	A0A164S642	Nucleoporin p58/p45.	Nucleoporin 154kD, isoform A.	0.856
APZ42_029205	APZ42_026545	A0A164PUN4	A0A164S4W4	Nucleoporin p58/p45.	Nuclear pore complex protein Nup155.	0.856
APZ42_032741	APZ42_022511	A0A164LUH8	A0A164VK28	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 140.	0.727