(23 nodes) Histone deacetylase binding network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_027096	SET and MYND domain-containing protein 4. (732 aa)
	APZ42_030806	Protein msta. (514 aa)
	APZ42_011549	Geminin. (202 aa)
	APZ42_013405	SET and MYND domain-containing protein 4. (324 aa)
	APZ42_014952	Putative SET and MYND domain-containing protein 4. (768 aa)
	EOG090X0IS7	Breast cancer metastasis-suppressor 1 protein-A. (260 aa)
	APZ42_017650	Histone-binding protein RBBP4. (428 aa)
	APZ42_028242	Putative Metastasis-associated protein MTA1. (872 aa)
	APZ42_017803	Ankyrin repeat family A protein 2. (272 aa)
	EOG090X0BDJ	Methyl-CpG-binding domain protein 3. (249 aa)
	APZ42_024060	Sin3 Histone deacetylase corepressor complex component SDS3. (388 aa)
	APZ42_023632	Msta protein. (530 aa)
	APZ42_014735	Erlin-1. (531 aa)
	APZ42_028382	Prohibitin. (272 aa)
	APZ42_022536	N-lysine methyltransferase SMYD2. (382 aa)
	APZ42_022637	SET domain-containing protein. (596 aa)
	APZ42_020931	Msta protein. (532 aa)
	APZ42_018678	Putative Myocyte-specific enhancer factor 2A. (384 aa)
	APZ42_017885	Uncharacterized protein. (554 aa)
	APZ42_017924	Putative MOG interacting and ectopic P-granules protein. (1075 aa)
	APZ42_024167	SET and MYND domain-containing protein 4. (59 aa)
	APZ42_023639	Msta protein. (344 aa)
	APZ42_025857	ANK_REP_REGION domain-containing protein. (1057 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_013405	APZ42_017650	A0A162QZ83	A0A0P5V197	SET and MYND domain-containing protein 4.	Histone-binding protein RBBP4.	0.698
APZ42_014735	APZ42_017650	A0A0P5C0M1	A0A0P5V197	Erlin-1.	Histone-binding protein RBBP4.	0.698
APZ42_014952	APZ42_017650	A0A162P2A5	A0A0P5V197	Putative SET and MYND domain-containing protein 4.	Histone-binding protein RBBP4.	0.698
APZ42_017650	APZ42_013405	A0A0P5V197	A0A162QZ83	Histone-binding protein RBBP4.	SET and MYND domain-containing protein 4.	0.698
APZ42_017650	APZ42_014735	A0A0P5V197	A0A0P5C0M1	Histone-binding protein RBBP4.	Erlin-1.	0.698
APZ42_017650	APZ42_014952	A0A0P5V197	A0A162P2A5	Histone-binding protein RBBP4.	Putative SET and MYND domain-containing protein 4.	0.698
APZ42_017650	APZ42_020931	A0A0P5V197	A0A164X4A4	Histone-binding protein RBBP4.	Msta protein.	0.698
APZ42_017650	APZ42_022536	A0A0P5V197	A0A164VLH9	Histone-binding protein RBBP4.	N-lysine methyltransferase SMYD2.	0.698
APZ42_017650	APZ42_022637	A0A0P5V197	A0A164VNG1	Histone-binding protein RBBP4.	SET domain-containing protein.	0.698
APZ42_017650	APZ42_023632	A0A0P5V197	A0A0P5EBS0	Histone-binding protein RBBP4.	Msta protein.	0.698
APZ42_017650	APZ42_023639	A0A0P5V197	A0A164UVL5	Histone-binding protein RBBP4.	Msta protein.	0.698
APZ42_017650	APZ42_024060	A0A0P5V197	A0A0P5EMQ6	Histone-binding protein RBBP4.	Sin3 Histone deacetylase corepressor complex component SDS3.	0.998
APZ42_017650	APZ42_024167	A0A0P5V197	A0A164UHR4	Histone-binding protein RBBP4.	SET and MYND domain-containing protein 4.	0.698
APZ42_017650	APZ42_027096	A0A0P5V197	A0A164RP77	Histone-binding protein RBBP4.	SET and MYND domain-containing protein 4.	0.698
APZ42_017650	APZ42_028242	A0A0P5V197	A0A0P5UUK1	Histone-binding protein RBBP4.	Putative Metastasis-associated protein MTA1.	0.997
APZ42_017650	APZ42_030806	A0A0P5V197	A0A164NDE1	Histone-binding protein RBBP4.	Protein msta.	0.698
APZ42_017650	EOG090X0BDJ	A0A0P5V197	A0A0P5JSE9	Histone-binding protein RBBP4.	Methyl-CpG-binding domain protein 3.	0.973
APZ42_017650	EOG090X0IS7	A0A0P5V197	A0A0P6EUU2	Histone-binding protein RBBP4.	Breast cancer metastasis-suppressor 1 protein-A.	0.912
APZ42_020931	APZ42_017650	A0A164X4A4	A0A0P5V197	Msta protein.	Histone-binding protein RBBP4.	0.698
APZ42_022536	APZ42_017650	A0A164VLH9	A0A0P5V197	N-lysine methyltransferase SMYD2.	Histone-binding protein RBBP4.	0.698