(11 nodes) Regulation of protein binding network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_024667	Phosrestin i arrestin b arrestin. (395 aa)
	APZ42_032141	Inactive serine/threonine-protein kinase TEX14. (891 aa)
	APZ42_021706	Serine/threonine/tyrosine-interacting protein. (205 aa)
	APZ42_026609	Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe. (378 aa)
	APZ42_022951	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (207 aa)
	APZ42_030649	Sortilin-related receptor. (2218 aa)
	APZ42_012711	Protein FAM192A. (233 aa)
	APZ42_003083	BMP and activin membrane-bound inhibitor. (204 aa)
	APZ42_010904	Four-jointed box protein 1. (523 aa)
	APZ42_028678	Dehydrogenase/reductase SDR family member 7C-B; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (363 aa)
	APZ42_018573	Putative Gremlin-2. (210 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_003083	APZ42_030649	A0A162CXH5	A0A164NQH8	BMP and activin membrane-bound inhibitor.	Sortilin-related receptor.	0.522
APZ42_018573	APZ42_024667	A0A0P6CFK1	A0A0N8CB51	Putative Gremlin-2.	Phosrestin i arrestin b arrestin.	0.426
APZ42_021706	APZ42_030649	A0A0P5SB03	A0A164NQH8	Serine/threonine/tyrosine-interacting protein.	Sortilin-related receptor.	0.687
APZ42_022951	APZ42_030649	A0A164VB60	A0A164NQH8	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Sortilin-related receptor.	0.497
APZ42_024667	APZ42_018573	A0A0N8CB51	A0A0P6CFK1	Phosrestin i arrestin b arrestin.	Putative Gremlin-2.	0.426
APZ42_030649	APZ42_003083	A0A164NQH8	A0A162CXH5	Sortilin-related receptor.	BMP and activin membrane-bound inhibitor.	0.522
APZ42_030649	APZ42_021706	A0A164NQH8	A0A0P5SB03	Sortilin-related receptor.	Serine/threonine/tyrosine-interacting protein.	0.687
APZ42_030649	APZ42_022951	A0A164NQH8	A0A164VB60	Sortilin-related receptor.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.497