(9 nodes) Early endosome to late endosome transport network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_021841	Ras-related protein Rab-7a. (208 aa)
	APZ42_032646	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (838 aa)
	APZ42_026385	ALG-2 interacting protein X. (1756 aa)
	APZ42_015982	Putative Alsin. (1566 aa)
	EOG090X0719	WD repeat-containing protein 91. (283 aa)
	APZ42_024536	Uncharacterized protein. (1669 aa)
	APZ42_022510	Hepatocyte growth factor-regulated tyrosine kinase substrate. (706 aa)
	APZ42_021596	Vacuolar protein sorting-associated protein 18. (921 aa)
	APZ42_020194	Putative Osteoclast-stimulating factor 1. (187 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_015982	APZ42_020194	A0A162NJ55	A0A164Y256	Putative Alsin.	Putative Osteoclast-stimulating factor 1.	0.733
APZ42_020194	APZ42_015982	A0A164Y256	A0A162NJ55	Putative Osteoclast-stimulating factor 1.	Putative Alsin.	0.733
APZ42_021596	APZ42_024536	A0A164WJA5	A0A164TYM1	Vacuolar protein sorting-associated protein 18.	Uncharacterized protein.	0.637
APZ42_021596	EOG090X0719	A0A164WJA5	A0A162PXA3	Vacuolar protein sorting-associated protein 18.	WD repeat-containing protein 91.	0.491
APZ42_022510	APZ42_026385	A0A164VLJ1	A0A162DAZ1	Hepatocyte growth factor-regulated tyrosine kinase substrate.	ALG-2 interacting protein X.	0.830
APZ42_024536	APZ42_021596	A0A164TYM1	A0A164WJA5	Uncharacterized protein.	Vacuolar protein sorting-associated protein 18.	0.637
APZ42_024536	EOG090X0719	A0A164TYM1	A0A162PXA3	Uncharacterized protein.	WD repeat-containing protein 91.	0.970
APZ42_026385	APZ42_022510	A0A162DAZ1	A0A164VLJ1	ALG-2 interacting protein X.	Hepatocyte growth factor-regulated tyrosine kinase substrate.	0.830
EOG090X0719	APZ42_021596	A0A162PXA3	A0A164WJA5	WD repeat-containing protein 91.	Vacuolar protein sorting-associated protein 18.	0.491
EOG090X0719	APZ42_024536	A0A162PXA3	A0A164TYM1	WD repeat-containing protein 91.	Uncharacterized protein.	0.970