(37 nodes) Sarcomere organization network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_001860	Uncharacterized protein. (356 aa)
	APZ42_000691	Uncharacterized protein. (112 aa)
	APZ42_034018	Uncharacterized protein. (943 aa)
	APZ42_033288	Protein quaking. (332 aa)
	APZ42_029836	Titin. (975 aa)
	APZ42_027627	Uncharacterized protein. (10574 aa)
	APZ42_027626	Uncharacterized protein. (4802 aa)
	APZ42_027672	Titin. (937 aa)
	APZ42_027339	Putative Rap guanine nucleotide exchange factor 5. (1078 aa)
	APZ42_027032	Putative LIM and SH3 domain protein Lasp. (461 aa)
	APZ42_026439	Uncharacterized protein. (3667 aa)
	APZ42_022865	Putative Bruno-3. (377 aa)
	APZ42_019485	Putative Inversin. (3235 aa)
	APZ42_018949	Integrin beta; Belongs to the integrin beta chain family. (786 aa)
	APZ42_017757	Putative Fibronectin type-III domain-containing protein 3A. (8101 aa)
	APZ42_027244	Hu-li tai shao. (742 aa)
	APZ42_032447	Putative Basigin. (359 aa)
	APZ42_014475	Protein O-mannosyl-transferase 1. (807 aa)
	APZ42_027247	WD repeat-containing protein. (602 aa)
	APZ42_011460	Calcineurin subunit B type 2. (170 aa)
	APZ42_032865	Integrin beta; Belongs to the integrin beta chain family. (810 aa)
	APZ42_030255	Integrin beta; Belongs to the integrin beta chain family. (791 aa)
	APZ42_027249	Chondroitin sulfate proteoglycan. (2570 aa)
	APZ42_019739	Spectrin domain with coiled-coils 1 (SPECC1), transcript variant, mRNA protein. (806 aa)
	APZ42_027257	Hu li tai shao-like protein. (334 aa)
	APZ42_013365	Sarcoglycan delta. (343 aa)
	APZ42_001738	Titin. (496 aa)
	APZ42_029977	Troponin I. (125 aa)
	APZ42_025707	Uncharacterized protein. (1156 aa)
	APZ42_024609	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (75 aa)
	APZ42_024143	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1780 aa)
	APZ42_014363	Integrin beta; Belongs to the integrin beta chain family. (614 aa)
	APZ42_015073	Flightin. (161 aa)
	APZ42_014476	Putative LIM domain-containing protein 2. (2301 aa)
	APZ42_011576	Talin-2. (2425 aa)
	APZ42_004675	Held out wings-like protein. (192 aa)
	APZ42_002735	Troponin I. (101 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001738	APZ42_001860	A0A162CZX8	A0A164IPD4	Titin.	Uncharacterized protein.	0.478
APZ42_001738	APZ42_014363	A0A162CZX8	A0A162EJD3	Titin.	Integrin beta; Belongs to the integrin beta chain family.	0.552
APZ42_001738	APZ42_018949	A0A162CZX8	A0A164YYE1	Titin.	Integrin beta; Belongs to the integrin beta chain family.	0.552
APZ42_001738	APZ42_027626	A0A162CZX8	A0A164R668	Titin.	Uncharacterized protein.	0.478
APZ42_001738	APZ42_027627	A0A162CZX8	A0A164R629	Titin.	Uncharacterized protein.	0.478
APZ42_001738	APZ42_030255	A0A162CZX8	A0A0P5XYV6	Titin.	Integrin beta; Belongs to the integrin beta chain family.	0.552
APZ42_001738	APZ42_032865	A0A162CZX8	A0A0P5XKW0	Titin.	Integrin beta; Belongs to the integrin beta chain family.	0.552
APZ42_001860	APZ42_001738	A0A164IPD4	A0A162CZX8	Uncharacterized protein.	Titin.	0.478
APZ42_001860	APZ42_002735	A0A164IPD4	A0A164I2N9	Uncharacterized protein.	Troponin I.	0.471
APZ42_001860	APZ42_011576	A0A164IPD4	A0A162STT1	Uncharacterized protein.	Talin-2.	0.488
APZ42_001860	APZ42_017757	A0A164IPD4	A0A164ZLB7	Uncharacterized protein.	Putative Fibronectin type-III domain-containing protein 3A.	0.732
APZ42_001860	APZ42_024143	A0A164IPD4	A0A162DGC9	Uncharacterized protein.	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.658
APZ42_001860	APZ42_024609	A0A164IPD4	A0A162DET1	Uncharacterized protein.	Myosin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.658
APZ42_001860	APZ42_026439	A0A164IPD4	A0A164S7Z8	Uncharacterized protein.	Uncharacterized protein.	0.788
APZ42_001860	APZ42_027626	A0A164IPD4	A0A164R668	Uncharacterized protein.	Uncharacterized protein.	0.899
APZ42_001860	APZ42_027672	A0A164IPD4	A0A164R6B0	Uncharacterized protein.	Titin.	0.729
APZ42_001860	APZ42_029836	A0A164IPD4	A0A164P9X9	Uncharacterized protein.	Titin.	0.945
APZ42_001860	APZ42_029977	A0A164IPD4	A0A162D3V6	Uncharacterized protein.	Troponin I.	0.471
APZ42_002735	APZ42_001860	A0A164I2N9	A0A164IPD4	Troponin I.	Uncharacterized protein.	0.471
APZ42_002735	APZ42_011460	A0A164I2N9	A0A0P5U8S7	Troponin I.	Calcineurin subunit B type 2.	0.727