(21 nodes) Late endosome to vacuole transport network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_016153	Charged multivesicular body protein 2B. (210 aa)
	APZ42_026385	ALG-2 interacting protein X. (1756 aa)
	APZ42_020704	Charged multivesicular body protein. (439 aa)
	APZ42_026035	Charged multivesicular body protein 2A. (228 aa)
	EOG090X0EF4	Charged multivesicular body protein 3. (216 aa)
	APZ42_021703	Transmembrane protein 50B. (156 aa)
	APZ42_028037	Vacuolar protein-sorting-associated protein 36. (357 aa)
	APZ42_029208	Signal transducing adapter molecule 1. (481 aa)
	APZ42_001740	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (210 aa)
	APZ42_014887	Vacuolar protein sorting-associated protein VTA1. (283 aa)
	APZ42_027141	Charged multivesicular body protein 1a. (199 aa)
	EOG090X09XM	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (252 aa)
	APZ42_023455	Charged multivesicular body protein 6. (208 aa)
	APZ42_020191	Uncharacterized protein. (233 aa)
	APZ42_033507	Charged multivesicular body protein 1a. (202 aa)
	EOG090X048D	Beclin-1-like protein. (441 aa)
	APZ42_011040	Charged multivesicular body protein 5. (234 aa)
	EOG090X0J87	Leptin receptor overlapping transcript 1. (116 aa)
	APZ42_014300	Vacuolar protein-sorting-associated protein 25. (172 aa)
	APZ42_014549	Phosphoinositide 3-kinase regulatory subunit 4. (1359 aa)
	APZ42_015345	Charged multivesicular body protein 4B. (140 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_001740	APZ42_011040	A0A0P5AFB7	A0A162T5J7	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Charged multivesicular body protein 5.	0.613
APZ42_001740	APZ42_014300	A0A0P5AFB7	A0A162Q6R0	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Vacuolar protein-sorting-associated protein 25.	0.993
APZ42_001740	APZ42_014887	A0A0P5AFB7	A0A0P5FH80	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Vacuolar protein sorting-associated protein VTA1.	0.470
APZ42_001740	APZ42_015345	A0A0P5AFB7	A0A162PEU0	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Charged multivesicular body protein 4B.	0.850
APZ42_001740	APZ42_016153	A0A0P5AFB7	A0A0N8AIK3	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Charged multivesicular body protein 2B.	0.744
APZ42_001740	APZ42_020191	A0A0P5AFB7	A0A0P5XJ49	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Uncharacterized protein.	0.470
APZ42_001740	APZ42_020704	A0A0P5AFB7	A0A0P6DXD5	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Charged multivesicular body protein.	0.847
APZ42_001740	APZ42_023455	A0A0P5AFB7	A0A0P5VD94	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Charged multivesicular body protein 6.	0.939
APZ42_001740	APZ42_026035	A0A0P5AFB7	A0A0P6BNY9	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Charged multivesicular body protein 2A.	0.874
APZ42_001740	APZ42_026385	A0A0P5AFB7	A0A162DAZ1	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	ALG-2 interacting protein X.	0.533
APZ42_001740	APZ42_027141	A0A0P5AFB7	A0A0P5JXS1	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Charged multivesicular body protein 1a.	0.694
APZ42_001740	APZ42_028037	A0A0P5AFB7	A0A164QVL9	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Vacuolar protein-sorting-associated protein 36.	0.995
APZ42_001740	APZ42_029208	A0A0P5AFB7	A0A164PUD8	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Signal transducing adapter molecule 1.	0.846
APZ42_001740	APZ42_033507	A0A0P5AFB7	A0A164L2D0	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Charged multivesicular body protein 1a.	0.542
APZ42_001740	EOG090X09XM	A0A0P5AFB7	A0A0P5KQR4	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.950
APZ42_001740	EOG090X0EF4	A0A0P5AFB7	A0A162PB75	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	Charged multivesicular body protein 3.	0.879
APZ42_011040	APZ42_001740	A0A162T5J7	A0A0P5AFB7	Charged multivesicular body protein 5.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.613
APZ42_011040	APZ42_014300	A0A162T5J7	A0A162Q6R0	Charged multivesicular body protein 5.	Vacuolar protein-sorting-associated protein 25.	0.573
APZ42_011040	APZ42_014887	A0A162T5J7	A0A0P5FH80	Charged multivesicular body protein 5.	Vacuolar protein sorting-associated protein VTA1.	0.986
APZ42_011040	APZ42_015345	A0A162T5J7	A0A162PEU0	Charged multivesicular body protein 5.	Charged multivesicular body protein 4B.	0.995